Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS29540 and AZOBR_RS29545 are separated by 157 nucleotides AZOBR_RS29545 and AZOBR_RS29550 are separated by 234 nucleotides
AZOBR_RS29540: AZOBR_RS29540 - putative auxiliary transport protein MFP family, at 749,305 to 750,390
_RS29540
AZOBR_RS29545: AZOBR_RS29545 - acriflavin resistance protein, at 750,548 to 753,712
_RS29545
AZOBR_RS29550: AZOBR_RS29550 - isochorismate synthase dhbC, at 753,947 to 755,152
_RS29550
Position (kb) 750
751
752
753
754 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 749.849 kb on + strand, within AZOBR_RS29540 at 750.457 kb on + strand at 750.493 kb on + strand at 750.493 kb on + strand at 750.494 kb on - strand at 750.749 kb on + strand at 751.229 kb on + strand, within AZOBR_RS29545 at 751.229 kb on + strand, within AZOBR_RS29545 at 751.229 kb on + strand, within AZOBR_RS29545 at 751.532 kb on + strand, within AZOBR_RS29545 at 751.533 kb on - strand, within AZOBR_RS29545 at 751.533 kb on - strand, within AZOBR_RS29545 at 751.934 kb on + strand, within AZOBR_RS29545 at 751.935 kb on - strand, within AZOBR_RS29545 at 752.160 kb on + strand, within AZOBR_RS29545 at 752.161 kb on - strand, within AZOBR_RS29545 at 752.161 kb on - strand, within AZOBR_RS29545 at 752.252 kb on + strand, within AZOBR_RS29545 at 752.576 kb on + strand, within AZOBR_RS29545 at 752.577 kb on - strand, within AZOBR_RS29545 at 752.744 kb on + strand, within AZOBR_RS29545 at 752.786 kb on + strand, within AZOBR_RS29545 at 752.786 kb on + strand, within AZOBR_RS29545 at 752.786 kb on + strand, within AZOBR_RS29545 at 752.787 kb on - strand, within AZOBR_RS29545 at 752.934 kb on + strand, within AZOBR_RS29545 at 753.176 kb on + strand, within AZOBR_RS29545 at 753.176 kb on + strand, within AZOBR_RS29545 at 753.176 kb on + strand, within AZOBR_RS29545 at 753.177 kb on - strand, within AZOBR_RS29545 at 753.278 kb on + strand, within AZOBR_RS29545 at 753.278 kb on + strand, within AZOBR_RS29545 at 753.278 kb on + strand, within AZOBR_RS29545 at 753.279 kb on - strand, within AZOBR_RS29545 at 753.279 kb on - strand, within AZOBR_RS29545 at 753.558 kb on - strand at 753.558 kb on - strand at 753.609 kb on + strand at 753.711 kb on - strand at 753.810 kb on + strand at 753.810 kb on + strand at 753.810 kb on + strand at 753.810 kb on + strand at 753.957 kb on + strand at 754.043 kb on + strand at 754.044 kb on - strand at 754.233 kb on - strand, within AZOBR_RS29550 at 754.374 kb on + strand, within AZOBR_RS29550 at 754.374 kb on + strand, within AZOBR_RS29550 at 754.375 kb on - strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.463 kb on + strand, within AZOBR_RS29550 at 754.464 kb on - strand, within AZOBR_RS29550 at 754.464 kb on - strand, within AZOBR_RS29550 at 754.487 kb on + strand, within AZOBR_RS29550 at 754.658 kb on + strand, within AZOBR_RS29550
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 749,849 + AZOBR_RS29540 0.50 -0.6 750,457 + +0.3 750,493 + +0.8 750,493 + -0.5 750,494 - -0.8 750,749 + +0.8 751,229 + AZOBR_RS29545 0.22 -0.1 751,229 + AZOBR_RS29545 0.22 -1.4 751,229 + AZOBR_RS29545 0.22 -0.1 751,532 + AZOBR_RS29545 0.31 +0.1 751,533 - AZOBR_RS29545 0.31 +0.7 751,533 - AZOBR_RS29545 0.31 +0.7 751,934 + AZOBR_RS29545 0.44 +4.4 751,935 - AZOBR_RS29545 0.44 -0.6 752,160 + AZOBR_RS29545 0.51 +1.8 752,161 - AZOBR_RS29545 0.51 +0.8 752,161 - AZOBR_RS29545 0.51 -1.9 752,252 + AZOBR_RS29545 0.54 -0.3 752,576 + AZOBR_RS29545 0.64 +0.4 752,577 - AZOBR_RS29545 0.64 -1.6 752,744 + AZOBR_RS29545 0.69 +1.1 752,786 + AZOBR_RS29545 0.71 -1.3 752,786 + AZOBR_RS29545 0.71 -0.6 752,786 + AZOBR_RS29545 0.71 -0.4 752,787 - AZOBR_RS29545 0.71 -0.3 752,934 + AZOBR_RS29545 0.75 -0.5 753,176 + AZOBR_RS29545 0.83 +0.9 753,176 + AZOBR_RS29545 0.83 -0.2 753,176 + AZOBR_RS29545 0.83 +1.5 753,177 - AZOBR_RS29545 0.83 -0.6 753,278 + AZOBR_RS29545 0.86 -0.9 753,278 + AZOBR_RS29545 0.86 +0.8 753,278 + AZOBR_RS29545 0.86 -0.7 753,279 - AZOBR_RS29545 0.86 -0.2 753,279 - AZOBR_RS29545 0.86 -0.4 753,558 - -1.1 753,558 - +2.9 753,609 + +1.5 753,711 - +2.7 753,810 + +1.6 753,810 + +0.2 753,810 + -1.4 753,810 + -0.1 753,957 + -1.2 754,043 + +1.8 754,044 - +0.9 754,233 - AZOBR_RS29550 0.24 -0.3 754,374 + AZOBR_RS29550 0.35 +2.8 754,374 + AZOBR_RS29550 0.35 -0.1 754,375 - AZOBR_RS29550 0.35 -1.6 754,463 + AZOBR_RS29550 0.43 +0.7 754,463 + AZOBR_RS29550 0.43 +0.3 754,463 + AZOBR_RS29550 0.43 -1.1 754,464 - AZOBR_RS29550 0.43 +0.8 754,464 - AZOBR_RS29550 0.43 +2.9 754,487 + AZOBR_RS29550 0.45 +0.6 754,658 + AZOBR_RS29550 0.59 -1.8
Or see this region's nucleotide sequence