Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28945 and AZOBR_RS28950 overlap by 4 nucleotides AZOBR_RS28950 and AZOBR_RS28955 overlap by 1 nucleotides AZOBR_RS28955 and AZOBR_RS28960 are separated by 78 nucleotides AZOBR_RS28960 and AZOBR_RS28965 are separated by 49 nucleotides AZOBR_RS28965 and AZOBR_RS28970 are separated by 339 nucleotides AZOBR_RS28970 and AZOBR_RS28975 are separated by 11 nucleotides
AZOBR_RS28945: AZOBR_RS28945 - hypothetical protein, at 639,681 to 640,043
_RS28945
AZOBR_RS28950: AZOBR_RS28950 - exported protein of unknown function, at 640,040 to 640,465
_RS28950
AZOBR_RS28955: AZOBR_RS28955 - hypothetical protein, at 640,465 to 640,749
_RS28955
AZOBR_RS28960: AZOBR_RS28960 - hypothetical protein, at 640,828 to 641,031
_RS28960
AZOBR_RS28965: AZOBR_RS28965 - hypothetical protein, at 641,081 to 641,296
_RS28965
AZOBR_RS28970: AZOBR_RS28970 - hypothetical protein, at 641,636 to 641,905
_RS28970
AZOBR_RS28975: AZOBR_RS28975 - hypothetical protein, at 641,917 to 642,459
_RS28975
Position (kb) 640
641
642 Strain fitness (log2 ratio) -2
-1
0
1 at 639.893 kb on + strand, within AZOBR_RS28945 at 639.894 kb on - strand, within AZOBR_RS28945 at 640.640 kb on + strand, within AZOBR_RS28955 at 640.640 kb on + strand, within AZOBR_RS28955 at 640.640 kb on + strand, within AZOBR_RS28955 at 640.641 kb on - strand, within AZOBR_RS28955 at 640.762 kb on + strand at 640.763 kb on - strand at 640.820 kb on + strand at 640.821 kb on - strand at 641.144 kb on + strand, within AZOBR_RS28965 at 641.833 kb on + strand, within AZOBR_RS28970 at 641.833 kb on + strand, within AZOBR_RS28970 at 641.833 kb on + strand, within AZOBR_RS28970 at 641.834 kb on - strand, within AZOBR_RS28970 at 641.918 kb on + strand at 641.919 kb on - strand at 642.001 kb on + strand, within AZOBR_RS28975
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 639,893 + AZOBR_RS28945 0.58 +0.8 639,894 - AZOBR_RS28945 0.59 -0.3 640,640 + AZOBR_RS28955 0.61 +0.0 640,640 + AZOBR_RS28955 0.61 -2.2 640,640 + AZOBR_RS28955 0.61 -0.6 640,641 - AZOBR_RS28955 0.62 -0.3 640,762 + -0.2 640,763 - +1.3 640,820 + +0.4 640,821 - -1.6 641,144 + AZOBR_RS28965 0.29 -0.1 641,833 + AZOBR_RS28970 0.73 -1.8 641,833 + AZOBR_RS28970 0.73 -0.5 641,833 + AZOBR_RS28970 0.73 +1.3 641,834 - AZOBR_RS28970 0.73 +0.9 641,918 + -0.8 641,919 - +0.6 642,001 + AZOBR_RS28975 0.15 +1.3
Or see this region's nucleotide sequence