Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28365 and AZOBR_RS28370 overlap by 4 nucleotides
AZOBR_RS28365: AZOBR_RS28365 - glycosyl transferase family 1, at 536,700 to 537,794
_RS28365
AZOBR_RS28370: AZOBR_RS28370 - hypothetical protein, at 537,791 to 538,915
_RS28370
Position (kb) 537
538
539 Strain fitness (log2 ratio) -2
-1
0
1
2 at 537.181 kb on - strand, within AZOBR_RS28365 at 537.480 kb on + strand, within AZOBR_RS28365 at 537.986 kb on + strand, within AZOBR_RS28370 at 538.208 kb on + strand, within AZOBR_RS28370 at 538.208 kb on + strand, within AZOBR_RS28370 at 538.209 kb on - strand, within AZOBR_RS28370 at 538.209 kb on - strand, within AZOBR_RS28370 at 538.448 kb on + strand, within AZOBR_RS28370 at 538.448 kb on + strand, within AZOBR_RS28370 at 538.448 kb on + strand, within AZOBR_RS28370 at 538.448 kb on + strand, within AZOBR_RS28370 at 538.449 kb on - strand, within AZOBR_RS28370 at 538.505 kb on + strand, within AZOBR_RS28370 at 538.505 kb on + strand, within AZOBR_RS28370 at 538.505 kb on + strand, within AZOBR_RS28370 at 538.506 kb on - strand, within AZOBR_RS28370 at 538.506 kb on - strand, within AZOBR_RS28370 at 538.586 kb on + strand, within AZOBR_RS28370 at 538.733 kb on - strand, within AZOBR_RS28370 at 538.927 kb on + strand at 538.972 kb on + strand at 538.972 kb on + strand at 538.973 kb on - strand at 538.973 kb on - strand at 538.975 kb on + strand at 539.100 kb on - strand at 539.247 kb on - strand at 539.247 kb on - strand at 539.412 kb on - strand at 539.564 kb on + strand at 539.564 kb on + strand at 539.564 kb on + strand at 539.565 kb on - strand at 539.565 kb on - strand at 539.565 kb on - strand at 539.565 kb on - strand at 539.912 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 537,181 - AZOBR_RS28365 0.44 -0.6 537,480 + AZOBR_RS28365 0.71 -1.6 537,986 + AZOBR_RS28370 0.17 +0.5 538,208 + AZOBR_RS28370 0.37 -0.1 538,208 + AZOBR_RS28370 0.37 +1.2 538,209 - AZOBR_RS28370 0.37 +1.9 538,209 - AZOBR_RS28370 0.37 +0.7 538,448 + AZOBR_RS28370 0.58 +0.4 538,448 + AZOBR_RS28370 0.58 -2.7 538,448 + AZOBR_RS28370 0.58 -1.5 538,448 + AZOBR_RS28370 0.58 +0.4 538,449 - AZOBR_RS28370 0.58 +1.1 538,505 + AZOBR_RS28370 0.63 -1.6 538,505 + AZOBR_RS28370 0.63 +0.0 538,505 + AZOBR_RS28370 0.63 +1.9 538,506 - AZOBR_RS28370 0.64 -0.3 538,506 - AZOBR_RS28370 0.64 -1.5 538,586 + AZOBR_RS28370 0.71 +0.6 538,733 - AZOBR_RS28370 0.84 -1.8 538,927 + +0.3 538,972 + -1.9 538,972 + +0.2 538,973 - +2.2 538,973 - -1.1 538,975 + +1.2 539,100 - -1.4 539,247 - -0.2 539,247 - -0.0 539,412 - -0.1 539,564 + +0.5 539,564 + -0.9 539,564 + +0.5 539,565 - -0.2 539,565 - -0.2 539,565 - -0.8 539,565 - +0.9 539,912 - +0.3
Or see this region's nucleotide sequence