Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS28330 and AZOBR_RS28335 are separated by 202 nucleotides AZOBR_RS28335 and AZOBR_RS28340 are separated by 44 nucleotides
AZOBR_RS28330: AZOBR_RS28330 - potassium channel protein, at 527,434 to 528,516
_RS28330
AZOBR_RS28335: AZOBR_RS28335 - hypothetical protein, at 528,719 to 530,371
_RS28335
AZOBR_RS28340: AZOBR_RS28340 - beta-xylosidase, at 530,416 to 531,342
_RS28340
Position (kb) 528
529
530
531 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 527.772 kb on - strand, within AZOBR_RS28330 at 527.772 kb on - strand, within AZOBR_RS28330 at 527.868 kb on + strand, within AZOBR_RS28330 at 527.868 kb on + strand, within AZOBR_RS28330 at 527.869 kb on - strand, within AZOBR_RS28330 at 528.241 kb on + strand, within AZOBR_RS28330 at 528.242 kb on - strand, within AZOBR_RS28330 at 528.444 kb on + strand at 528.444 kb on + strand at 528.515 kb on - strand at 528.619 kb on - strand at 528.684 kb on + strand at 528.684 kb on + strand at 528.684 kb on + strand at 528.684 kb on + strand at 528.756 kb on + strand at 529.168 kb on - strand, within AZOBR_RS28335 at 529.168 kb on - strand, within AZOBR_RS28335 at 529.168 kb on - strand, within AZOBR_RS28335 at 529.168 kb on - strand, within AZOBR_RS28335 at 529.642 kb on + strand, within AZOBR_RS28335 at 529.642 kb on + strand, within AZOBR_RS28335 at 529.643 kb on - strand, within AZOBR_RS28335 at 529.643 kb on - strand, within AZOBR_RS28335 at 529.755 kb on + strand, within AZOBR_RS28335 at 529.755 kb on + strand, within AZOBR_RS28335 at 529.756 kb on - strand, within AZOBR_RS28335 at 529.756 kb on - strand, within AZOBR_RS28335 at 529.971 kb on + strand, within AZOBR_RS28335 at 529.992 kb on + strand, within AZOBR_RS28335 at 529.992 kb on + strand, within AZOBR_RS28335 at 529.992 kb on + strand, within AZOBR_RS28335 at 529.992 kb on + strand, within AZOBR_RS28335 at 529.992 kb on + strand, within AZOBR_RS28335 at 529.993 kb on - strand, within AZOBR_RS28335 at 529.993 kb on - strand, within AZOBR_RS28335 at 529.993 kb on - strand, within AZOBR_RS28335 at 529.993 kb on - strand, within AZOBR_RS28335 at 530.296 kb on + strand at 530.296 kb on + strand at 530.297 kb on - strand at 530.573 kb on - strand, within AZOBR_RS28340 at 530.765 kb on + strand, within AZOBR_RS28340 at 530.774 kb on + strand, within AZOBR_RS28340 at 530.823 kb on + strand, within AZOBR_RS28340 at 530.837 kb on + strand, within AZOBR_RS28340 at 530.837 kb on + strand, within AZOBR_RS28340 at 530.838 kb on - strand, within AZOBR_RS28340 at 530.840 kb on + strand, within AZOBR_RS28340 at 530.840 kb on + strand, within AZOBR_RS28340 at 530.841 kb on - strand, within AZOBR_RS28340 at 530.841 kb on - strand, within AZOBR_RS28340 at 530.909 kb on + strand, within AZOBR_RS28340
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 527,772 - AZOBR_RS28330 0.31 +0.8 527,772 - AZOBR_RS28330 0.31 +0.6 527,868 + AZOBR_RS28330 0.40 +0.1 527,868 + AZOBR_RS28330 0.40 -0.3 527,869 - AZOBR_RS28330 0.40 -0.7 528,241 + AZOBR_RS28330 0.75 -0.9 528,242 - AZOBR_RS28330 0.75 -0.7 528,444 + +0.1 528,444 + +0.8 528,515 - +1.7 528,619 - -1.1 528,684 + +0.2 528,684 + -2.2 528,684 + +1.3 528,684 + +2.9 528,756 + +0.4 529,168 - AZOBR_RS28335 0.27 -0.3 529,168 - AZOBR_RS28335 0.27 -1.0 529,168 - AZOBR_RS28335 0.27 -0.8 529,168 - AZOBR_RS28335 0.27 -0.3 529,642 + AZOBR_RS28335 0.56 -1.1 529,642 + AZOBR_RS28335 0.56 -2.0 529,643 - AZOBR_RS28335 0.56 -0.5 529,643 - AZOBR_RS28335 0.56 +0.3 529,755 + AZOBR_RS28335 0.63 +0.3 529,755 + AZOBR_RS28335 0.63 -1.8 529,756 - AZOBR_RS28335 0.63 -1.6 529,756 - AZOBR_RS28335 0.63 +0.1 529,971 + AZOBR_RS28335 0.76 +0.3 529,992 + AZOBR_RS28335 0.77 +1.2 529,992 + AZOBR_RS28335 0.77 -3.0 529,992 + AZOBR_RS28335 0.77 +0.0 529,992 + AZOBR_RS28335 0.77 +0.3 529,992 + AZOBR_RS28335 0.77 +0.0 529,993 - AZOBR_RS28335 0.77 +0.7 529,993 - AZOBR_RS28335 0.77 +0.2 529,993 - AZOBR_RS28335 0.77 -0.2 529,993 - AZOBR_RS28335 0.77 +0.8 530,296 + -3.4 530,296 + -0.4 530,297 - +0.4 530,573 - AZOBR_RS28340 0.17 -1.1 530,765 + AZOBR_RS28340 0.38 -0.2 530,774 + AZOBR_RS28340 0.39 +0.3 530,823 + AZOBR_RS28340 0.44 +1.3 530,837 + AZOBR_RS28340 0.45 -0.7 530,837 + AZOBR_RS28340 0.45 -0.8 530,838 - AZOBR_RS28340 0.46 -1.0 530,840 + AZOBR_RS28340 0.46 +0.1 530,840 + AZOBR_RS28340 0.46 +0.1 530,841 - AZOBR_RS28340 0.46 +0.3 530,841 - AZOBR_RS28340 0.46 +0.1 530,909 + AZOBR_RS28340 0.53 -0.6
Or see this region's nucleotide sequence