Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS27930

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS27925 and AZOBR_RS27930 are separated by 13 nucleotidesAZOBR_RS27930 and AZOBR_RS27935 are separated by 56 nucleotides AZOBR_RS27925: AZOBR_RS27925 - oxidoreductase, at 434,918 to 436,093 _RS27925 AZOBR_RS27930: AZOBR_RS27930 - AP endonuclease, at 436,107 to 437,162 _RS27930 AZOBR_RS27935: AZOBR_RS27935 - ABC transporter substrate-binding protein, at 437,219 to 438,172 _RS27935 Position (kb) 436 437 438Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 435.655 kb on - strand, within AZOBR_RS27925at 435.655 kb on - strand, within AZOBR_RS27925at 435.882 kb on + strand, within AZOBR_RS27925at 436.292 kb on - strand, within AZOBR_RS27930at 436.459 kb on + strand, within AZOBR_RS27930at 436.471 kb on + strand, within AZOBR_RS27930at 436.721 kb on - strand, within AZOBR_RS27930at 436.721 kb on - strandat 436.727 kb on - strand, within AZOBR_RS27930at 436.886 kb on - strand, within AZOBR_RS27930at 437.239 kb on - strandat 437.242 kb on - strandat 437.289 kb on + strandat 437.289 kb on + strandat 437.289 kb on + strandat 437.290 kb on - strandat 437.290 kb on - strandat 437.290 kb on - strandat 437.599 kb on - strand, within AZOBR_RS27935at 437.778 kb on + strand, within AZOBR_RS27935at 437.778 kb on + strand, within AZOBR_RS27935at 437.778 kb on + strand, within AZOBR_RS27935at 437.778 kb on + strand, within AZOBR_RS27935at 437.779 kb on - strand, within AZOBR_RS27935at 437.779 kb on - strand, within AZOBR_RS27935

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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435,655 - AZOBR_RS27925 0.63 -3.4
435,655 - AZOBR_RS27925 0.63 -0.4
435,882 + AZOBR_RS27925 0.82 -0.5
436,292 - AZOBR_RS27930 0.18 -1.3
436,459 + AZOBR_RS27930 0.33 +0.6
436,471 + AZOBR_RS27930 0.34 +0.1
436,721 - AZOBR_RS27930 0.58 +1.1
436,721 - +0.8
436,727 - AZOBR_RS27930 0.59 +0.0
436,886 - AZOBR_RS27930 0.74 +1.8
437,239 - +2.8
437,242 - -2.1
437,289 + -0.1
437,289 + -2.4
437,289 + -0.0
437,290 - -0.5
437,290 - +0.0
437,290 - -0.2
437,599 - AZOBR_RS27935 0.40 -0.1
437,778 + AZOBR_RS27935 0.59 -0.8
437,778 + AZOBR_RS27935 0.59 +0.7
437,778 + AZOBR_RS27935 0.59 -0.1
437,778 + AZOBR_RS27935 0.59 +0.9
437,779 - AZOBR_RS27935 0.59 -0.0
437,779 - AZOBR_RS27935 0.59 +0.2

Or see this region's nucleotide sequence