Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS25200 and AZOBR_RS25205 are separated by 193 nucleotides AZOBR_RS25205 and AZOBR_RS25210 are separated by 128 nucleotides
AZOBR_RS25200: AZOBR_RS25200 - ABC transporter substrate-binding protein, at 711,696 to 712,697
_RS25200
AZOBR_RS25205: AZOBR_RS25205 - putative NADH dehydrogenase/NAD(P)H nitroreductase, at 712,891 to 713,475
_RS25205
AZOBR_RS25210: AZOBR_RS25210 - hypothetical protein, at 713,604 to 714,428
_RS25210
Position (kb) 712
713
714 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 711.994 kb on + strand, within AZOBR_RS25200 at 711.995 kb on - strand, within AZOBR_RS25200 at 712.114 kb on - strand, within AZOBR_RS25200 at 712.282 kb on + strand, within AZOBR_RS25200 at 712.282 kb on + strand, within AZOBR_RS25200 at 712.402 kb on + strand, within AZOBR_RS25200 at 712.403 kb on - strand, within AZOBR_RS25200 at 712.403 kb on - strand, within AZOBR_RS25200 at 712.462 kb on + strand, within AZOBR_RS25200 at 712.463 kb on - strand, within AZOBR_RS25200 at 712.607 kb on - strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.795 kb on + strand at 713.186 kb on + strand, within AZOBR_RS25205 at 713.186 kb on + strand, within AZOBR_RS25205 at 713.399 kb on + strand, within AZOBR_RS25205 at 713.650 kb on + strand at 713.650 kb on + strand at 713.659 kb on + strand at 713.659 kb on + strand at 713.660 kb on - strand at 713.674 kb on + strand at 713.839 kb on + strand, within AZOBR_RS25210 at 713.839 kb on + strand, within AZOBR_RS25210 at 713.839 kb on + strand, within AZOBR_RS25210 at 713.840 kb on - strand, within AZOBR_RS25210 at 713.840 kb on - strand, within AZOBR_RS25210 at 713.840 kb on - strand, within AZOBR_RS25210 at 713.921 kb on - strand, within AZOBR_RS25210 at 714.008 kb on - strand, within AZOBR_RS25210 at 714.038 kb on - strand, within AZOBR_RS25210 at 714.038 kb on - strand, within AZOBR_RS25210 at 714.043 kb on + strand, within AZOBR_RS25210 at 714.043 kb on + strand, within AZOBR_RS25210 at 714.043 kb on + strand, within AZOBR_RS25210 at 714.044 kb on - strand, within AZOBR_RS25210 at 714.134 kb on + strand, within AZOBR_RS25210 at 714.134 kb on + strand, within AZOBR_RS25210 at 714.134 kb on + strand, within AZOBR_RS25210 at 714.135 kb on - strand, within AZOBR_RS25210 at 714.137 kb on + strand, within AZOBR_RS25210 at 714.138 kb on - strand, within AZOBR_RS25210 at 714.164 kb on - strand, within AZOBR_RS25210 at 714.230 kb on - strand, within AZOBR_RS25210 at 714.322 kb on + strand, within AZOBR_RS25210 at 714.323 kb on - strand, within AZOBR_RS25210 at 714.418 kb on + strand at 714.419 kb on - strand at 714.419 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 711,994 + AZOBR_RS25200 0.30 -0.2 711,995 - AZOBR_RS25200 0.30 -0.9 712,114 - AZOBR_RS25200 0.42 +0.4 712,282 + AZOBR_RS25200 0.58 -0.2 712,282 + AZOBR_RS25200 0.58 -2.0 712,402 + AZOBR_RS25200 0.70 -0.4 712,403 - AZOBR_RS25200 0.71 -1.9 712,403 - AZOBR_RS25200 0.71 -0.1 712,462 + AZOBR_RS25200 0.76 -0.5 712,463 - AZOBR_RS25200 0.77 +0.4 712,607 - +1.8 712,705 + -0.7 712,705 + +0.2 712,706 - +1.6 712,706 - +0.3 712,795 + +1.2 713,186 + AZOBR_RS25205 0.50 -2.0 713,186 + AZOBR_RS25205 0.50 +0.1 713,399 + AZOBR_RS25205 0.87 -0.8 713,650 + -2.4 713,650 + -1.1 713,659 + +1.1 713,659 + -0.5 713,660 - -0.8 713,674 + -3.4 713,839 + AZOBR_RS25210 0.28 -0.5 713,839 + AZOBR_RS25210 0.28 -0.2 713,839 + AZOBR_RS25210 0.28 -1.7 713,840 - AZOBR_RS25210 0.29 +0.1 713,840 - AZOBR_RS25210 0.29 +0.8 713,840 - AZOBR_RS25210 0.29 +1.3 713,921 - AZOBR_RS25210 0.38 +0.2 714,008 - AZOBR_RS25210 0.49 -0.2 714,038 - AZOBR_RS25210 0.53 -0.3 714,038 - AZOBR_RS25210 0.53 +0.1 714,043 + AZOBR_RS25210 0.53 -0.1 714,043 + AZOBR_RS25210 0.53 -2.0 714,043 + AZOBR_RS25210 0.53 -1.2 714,044 - AZOBR_RS25210 0.53 +0.1 714,134 + AZOBR_RS25210 0.64 +0.6 714,134 + AZOBR_RS25210 0.64 -0.5 714,134 + AZOBR_RS25210 0.64 -1.1 714,135 - AZOBR_RS25210 0.64 +0.8 714,137 + AZOBR_RS25210 0.65 -2.8 714,138 - AZOBR_RS25210 0.65 +0.6 714,164 - AZOBR_RS25210 0.68 +2.8 714,230 - AZOBR_RS25210 0.76 +0.9 714,322 + AZOBR_RS25210 0.87 +0.6 714,323 - AZOBR_RS25210 0.87 -1.2 714,418 + -0.4 714,419 - -0.6 714,419 - +0.5
Or see this region's nucleotide sequence