Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24535 and AZOBR_RS24540 are separated by 13 nucleotides AZOBR_RS24540 and AZOBR_RS24545 overlap by 4 nucleotides AZOBR_RS24545 and AZOBR_RS24550 are separated by 13 nucleotides
AZOBR_RS24535: AZOBR_RS24535 - formylmethanofuran dehydrogenase subunit A, at 562,501 to 564,162
_RS24535
AZOBR_RS24540: AZOBR_RS24540 - formylmethanofuran--tetrahydromethanopterin formyltransferase, at 564,176 to 565,075
_RS24540
AZOBR_RS24545: AZOBR_RS24545 - putative formylmethanofuran dehydrogenase subunit C, at 565,072 to 565,896
_RS24545
AZOBR_RS24550: AZOBR_RS24550 - branched-chain amino acid ABC transporter substrate-binding protein, at 565,910 to 567,100
_RS24550
Position (kb) 565
566 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 564.540 kb on - strand, within AZOBR_RS24540 at 564.587 kb on + strand, within AZOBR_RS24540 at 564.806 kb on + strand, within AZOBR_RS24540 at 564.806 kb on + strand, within AZOBR_RS24540 at 564.806 kb on + strand, within AZOBR_RS24540 at 564.806 kb on + strand, within AZOBR_RS24540 at 564.806 kb on + strand, within AZOBR_RS24540 at 564.806 kb on + strand, within AZOBR_RS24540 at 564.806 kb on + strand, within AZOBR_RS24540 at 564.807 kb on - strand, within AZOBR_RS24540 at 565.348 kb on + strand, within AZOBR_RS24545 at 565.839 kb on + strand at 566.004 kb on - strand at 566.591 kb on - strand, within AZOBR_RS24550 at 566.591 kb on - strand, within AZOBR_RS24550 at 566.657 kb on + strand, within AZOBR_RS24550 at 566.657 kb on + strand, within AZOBR_RS24550 at 566.658 kb on - strand, within AZOBR_RS24550 at 566.658 kb on - strand, within AZOBR_RS24550 at 566.811 kb on - strand, within AZOBR_RS24550 at 566.811 kb on - strand, within AZOBR_RS24550
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 564,540 - AZOBR_RS24540 0.40 +0.7 564,587 + AZOBR_RS24540 0.46 +2.8 564,806 + AZOBR_RS24540 0.70 +0.6 564,806 + AZOBR_RS24540 0.70 +0.0 564,806 + AZOBR_RS24540 0.70 +1.0 564,806 + AZOBR_RS24540 0.70 -1.0 564,806 + AZOBR_RS24540 0.70 +0.1 564,806 + AZOBR_RS24540 0.70 -2.3 564,806 + AZOBR_RS24540 0.70 +1.2 564,807 - AZOBR_RS24540 0.70 +1.0 565,348 + AZOBR_RS24545 0.33 +1.8 565,839 + +1.4 566,004 - +0.9 566,591 - AZOBR_RS24550 0.57 +1.2 566,591 - AZOBR_RS24550 0.57 -0.1 566,657 + AZOBR_RS24550 0.63 -0.4 566,657 + AZOBR_RS24550 0.63 +0.5 566,658 - AZOBR_RS24550 0.63 -1.2 566,658 - AZOBR_RS24550 0.63 -0.9 566,811 - AZOBR_RS24550 0.76 +2.8 566,811 - AZOBR_RS24550 0.76 +0.2
Or see this region's nucleotide sequence