Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24060 and AZOBR_RS24065 are separated by 463 nucleotides AZOBR_RS24065 and AZOBR_RS24070 are separated by 296 nucleotides
AZOBR_RS24060: AZOBR_RS24060 - multidrug transporter, at 435,941 to 437,047
_RS24060
AZOBR_RS24065: AZOBR_RS24065 - aspartate aminotransferase, at 437,511 to 438,689
_RS24065
AZOBR_RS24070: AZOBR_RS24070 - acetyl-CoA hydrolase, at 438,986 to 440,479
_RS24070
Position (kb) 437
438
439 Strain fitness (log2 ratio) -2
-1
0
1
2 at 436.524 kb on + strand, within AZOBR_RS24060 at 436.525 kb on - strand, within AZOBR_RS24060 at 436.525 kb on - strand, within AZOBR_RS24060 at 436.584 kb on + strand, within AZOBR_RS24060 at 436.585 kb on - strand, within AZOBR_RS24060 at 437.286 kb on + strand at 437.308 kb on + strand at 437.308 kb on + strand at 437.308 kb on + strand at 437.308 kb on + strand at 437.308 kb on + strand at 437.308 kb on + strand at 437.308 kb on + strand at 437.308 kb on + strand at 437.324 kb on + strand at 437.342 kb on + strand at 437.890 kb on + strand, within AZOBR_RS24065 at 437.891 kb on - strand, within AZOBR_RS24065 at 437.918 kb on + strand, within AZOBR_RS24065 at 437.919 kb on - strand, within AZOBR_RS24065 at 437.919 kb on - strand, within AZOBR_RS24065 at 438.073 kb on + strand, within AZOBR_RS24065 at 438.073 kb on + strand, within AZOBR_RS24065 at 438.304 kb on + strand, within AZOBR_RS24065 at 438.305 kb on - strand, within AZOBR_RS24065 at 438.305 kb on - strand, within AZOBR_RS24065 at 438.305 kb on - strand, within AZOBR_RS24065 at 438.313 kb on + strand, within AZOBR_RS24065 at 438.314 kb on - strand, within AZOBR_RS24065 at 438.496 kb on + strand, within AZOBR_RS24065 at 438.496 kb on + strand, within AZOBR_RS24065 at 438.496 kb on + strand, within AZOBR_RS24065 at 438.497 kb on - strand, within AZOBR_RS24065 at 438.755 kb on - strand at 438.755 kb on - strand at 438.881 kb on + strand at 438.881 kb on + strand at 438.882 kb on - strand at 438.899 kb on + strand at 438.990 kb on - strand at 438.990 kb on - strand at 438.990 kb on - strand at 439.520 kb on + strand, within AZOBR_RS24070 at 439.520 kb on + strand, within AZOBR_RS24070 at 439.520 kb on + strand, within AZOBR_RS24070 at 439.521 kb on - strand, within AZOBR_RS24070 at 439.521 kb on - strand, within AZOBR_RS24070 at 439.521 kb on - strand, within AZOBR_RS24070 at 439.521 kb on - strand, within AZOBR_RS24070 at 439.521 kb on - strand, within AZOBR_RS24070
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 436,524 + AZOBR_RS24060 0.53 -0.9 436,525 - AZOBR_RS24060 0.53 -0.5 436,525 - AZOBR_RS24060 0.53 -1.4 436,584 + AZOBR_RS24060 0.58 -0.4 436,585 - AZOBR_RS24060 0.58 +1.6 437,286 + -1.7 437,308 + +1.4 437,308 + -1.5 437,308 + -2.1 437,308 + +1.3 437,308 + +0.4 437,308 + +0.3 437,308 + -0.5 437,308 + -1.1 437,324 + +0.6 437,342 + +1.0 437,890 + AZOBR_RS24065 0.32 +0.9 437,891 - AZOBR_RS24065 0.32 -0.1 437,918 + AZOBR_RS24065 0.35 +0.7 437,919 - AZOBR_RS24065 0.35 -0.7 437,919 - AZOBR_RS24065 0.35 -0.1 438,073 + AZOBR_RS24065 0.48 +0.5 438,073 + AZOBR_RS24065 0.48 -2.1 438,304 + AZOBR_RS24065 0.67 -2.6 438,305 - AZOBR_RS24065 0.67 -1.2 438,305 - AZOBR_RS24065 0.67 +0.8 438,305 - AZOBR_RS24065 0.67 +0.5 438,313 + AZOBR_RS24065 0.68 -0.2 438,314 - AZOBR_RS24065 0.68 -2.5 438,496 + AZOBR_RS24065 0.84 +0.8 438,496 + AZOBR_RS24065 0.84 -1.4 438,496 + AZOBR_RS24065 0.84 +0.3 438,497 - AZOBR_RS24065 0.84 +1.2 438,755 - +1.8 438,755 - -0.2 438,881 + +0.3 438,881 + -1.1 438,882 - -0.3 438,899 + +1.8 438,990 - +0.1 438,990 - +0.4 438,990 - +0.0 439,520 + AZOBR_RS24070 0.36 +1.2 439,520 + AZOBR_RS24070 0.36 -0.7 439,520 + AZOBR_RS24070 0.36 -0.9 439,521 - AZOBR_RS24070 0.36 -1.3 439,521 - AZOBR_RS24070 0.36 +0.9 439,521 - AZOBR_RS24070 0.36 +0.3 439,521 - AZOBR_RS24070 0.36 -0.2 439,521 - AZOBR_RS24070 0.36 +1.0
Or see this region's nucleotide sequence