Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23875 and AZOBR_RS23880 are separated by 276 nucleotides AZOBR_RS23880 and AZOBR_RS23885 are separated by 274 nucleotides
AZOBR_RS23875: AZOBR_RS23875 - hypothetical protein, at 386,756 to 388,597
_RS23875
AZOBR_RS23880: AZOBR_RS23880 - hydrolase, at 388,874 to 389,503
_RS23880
AZOBR_RS23885: AZOBR_RS23885 - multidrug ABC transporter ATP-binding protein, at 389,778 to 390,704
_RS23885
Position (kb) 388
389
390 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 388.033 kb on + strand, within AZOBR_RS23875 at 388.344 kb on - strand, within AZOBR_RS23875 at 388.365 kb on + strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.366 kb on - strand, within AZOBR_RS23875 at 388.467 kb on + strand at 388.685 kb on + strand at 388.686 kb on - strand at 388.686 kb on - strand at 388.784 kb on + strand at 388.784 kb on + strand at 388.785 kb on - strand at 388.785 kb on - strand at 388.790 kb on + strand at 388.791 kb on - strand at 388.791 kb on - strand at 389.193 kb on + strand, within AZOBR_RS23880 at 389.193 kb on + strand, within AZOBR_RS23880 at 389.193 kb on + strand, within AZOBR_RS23880 at 389.194 kb on - strand, within AZOBR_RS23880 at 389.194 kb on - strand, within AZOBR_RS23880 at 389.582 kb on + strand at 389.582 kb on + strand at 389.583 kb on - strand at 389.583 kb on - strand at 389.585 kb on + strand at 389.586 kb on - strand at 389.729 kb on + strand at 389.817 kb on + strand at 389.817 kb on + strand at 389.817 kb on + strand at 389.818 kb on - strand at 390.354 kb on + strand, within AZOBR_RS23885 at 390.354 kb on + strand, within AZOBR_RS23885 at 390.355 kb on - strand, within AZOBR_RS23885 at 390.355 kb on - strand, within AZOBR_RS23885 at 390.355 kb on - strand, within AZOBR_RS23885 at 390.355 kb on - strand, within AZOBR_RS23885
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 388,033 + AZOBR_RS23875 0.69 +1.3 388,344 - AZOBR_RS23875 0.86 +1.4 388,365 + AZOBR_RS23875 0.87 -0.4 388,366 - AZOBR_RS23875 0.87 +0.0 388,366 - AZOBR_RS23875 0.87 -2.4 388,366 - AZOBR_RS23875 0.87 +0.4 388,366 - AZOBR_RS23875 0.87 -0.6 388,366 - AZOBR_RS23875 0.87 -0.9 388,366 - AZOBR_RS23875 0.87 +0.1 388,467 + -1.1 388,685 + +1.8 388,686 - -0.6 388,686 - -1.4 388,784 + +1.7 388,784 + -0.5 388,785 - -0.6 388,785 - -0.2 388,790 + +1.7 388,791 - +0.5 388,791 - +0.8 389,193 + AZOBR_RS23880 0.51 +1.2 389,193 + AZOBR_RS23880 0.51 -1.7 389,193 + AZOBR_RS23880 0.51 -0.5 389,194 - AZOBR_RS23880 0.51 -1.6 389,194 - AZOBR_RS23880 0.51 +2.8 389,582 + +0.1 389,582 + -0.8 389,583 - -1.7 389,583 - +1.8 389,585 + -0.3 389,586 - -1.2 389,729 + -0.9 389,817 + +1.2 389,817 + -0.0 389,817 + +2.9 389,818 - +0.3 390,354 + AZOBR_RS23885 0.62 -0.7 390,354 + AZOBR_RS23885 0.62 -0.4 390,355 - AZOBR_RS23885 0.62 -0.3 390,355 - AZOBR_RS23885 0.62 +1.2 390,355 - AZOBR_RS23885 0.62 +1.3 390,355 - AZOBR_RS23885 0.62 +0.2
Or see this region's nucleotide sequence