Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23305 and AZOBR_RS23310 are separated by 35 nucleotides AZOBR_RS23310 and AZOBR_RS23315 are separated by 53 nucleotides AZOBR_RS23315 and AZOBR_RS23320 overlap by 7 nucleotides
AZOBR_RS23305: AZOBR_RS23305 - hypothetical protein, at 254,386 to 255,366
_RS23305
AZOBR_RS23310: AZOBR_RS23310 - hypothetical protein, at 255,402 to 256,379
_RS23310
AZOBR_RS23315: AZOBR_RS23315 - conserved membrane protein of unknown function, at 256,433 to 256,918
_RS23315
AZOBR_RS23320: AZOBR_RS23320 - C4-dicarboxylate ABC transporter permease, at 256,912 to 258,414
_RS23320
Position (kb) 255
256
257 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 254.531 kb on - strand, within AZOBR_RS23305 at 254.531 kb on - strand, within AZOBR_RS23305 at 254.632 kb on + strand, within AZOBR_RS23305 at 254.632 kb on + strand, within AZOBR_RS23305 at 254.632 kb on + strand, within AZOBR_RS23305 at 254.632 kb on + strand, within AZOBR_RS23305 at 254.632 kb on + strand, within AZOBR_RS23305 at 254.633 kb on - strand, within AZOBR_RS23305 at 254.633 kb on - strand, within AZOBR_RS23305 at 254.634 kb on + strand, within AZOBR_RS23305 at 254.634 kb on + strand, within AZOBR_RS23305 at 254.634 kb on + strand, within AZOBR_RS23305 at 254.634 kb on + strand, within AZOBR_RS23305 at 254.635 kb on - strand, within AZOBR_RS23305 at 254.690 kb on - strand, within AZOBR_RS23305 at 254.690 kb on - strand, within AZOBR_RS23305 at 254.728 kb on + strand, within AZOBR_RS23305 at 254.728 kb on + strand, within AZOBR_RS23305 at 254.729 kb on - strand, within AZOBR_RS23305 at 254.729 kb on - strand, within AZOBR_RS23305 at 255.092 kb on - strand, within AZOBR_RS23305 at 255.134 kb on - strand, within AZOBR_RS23305 at 255.355 kb on + strand at 255.356 kb on - strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.364 kb on + strand at 255.368 kb on + strand at 255.369 kb on - strand at 255.703 kb on - strand, within AZOBR_RS23310 at 255.703 kb on - strand, within AZOBR_RS23310 at 256.252 kb on - strand, within AZOBR_RS23310 at 256.252 kb on - strand, within AZOBR_RS23310 at 256.291 kb on - strand at 256.496 kb on + strand, within AZOBR_RS23315 at 256.709 kb on + strand, within AZOBR_RS23315 at 256.709 kb on + strand, within AZOBR_RS23315 at 256.710 kb on - strand, within AZOBR_RS23315 at 256.710 kb on - strand, within AZOBR_RS23315 at 256.867 kb on - strand, within AZOBR_RS23315 at 256.867 kb on - strand, within AZOBR_RS23315 at 256.867 kb on - strand, within AZOBR_RS23315 at 256.911 kb on + strand at 256.911 kb on + strand at 256.912 kb on - strand at 256.922 kb on + strand at 256.987 kb on + strand at 256.987 kb on + strand at 256.987 kb on + strand at 256.987 kb on + strand at 256.987 kb on + strand at 256.987 kb on + strand at 256.987 kb on + strand at 256.988 kb on - strand at 257.179 kb on + strand, within AZOBR_RS23320 at 257.179 kb on + strand, within AZOBR_RS23320 at 257.179 kb on + strand, within AZOBR_RS23320
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 254,531 - AZOBR_RS23305 0.15 +2.0 254,531 - AZOBR_RS23305 0.15 -0.2 254,632 + AZOBR_RS23305 0.25 +0.2 254,632 + AZOBR_RS23305 0.25 -0.7 254,632 + AZOBR_RS23305 0.25 +1.2 254,632 + AZOBR_RS23305 0.25 +0.5 254,632 + AZOBR_RS23305 0.25 +0.5 254,633 - AZOBR_RS23305 0.25 -0.4 254,633 - AZOBR_RS23305 0.25 -0.3 254,634 + AZOBR_RS23305 0.25 +2.6 254,634 + AZOBR_RS23305 0.25 +0.2 254,634 + AZOBR_RS23305 0.25 +0.5 254,634 + AZOBR_RS23305 0.25 +1.2 254,635 - AZOBR_RS23305 0.25 -1.9 254,690 - AZOBR_RS23305 0.31 +1.0 254,690 - AZOBR_RS23305 0.31 -2.1 254,728 + AZOBR_RS23305 0.35 -0.4 254,728 + AZOBR_RS23305 0.35 +1.1 254,729 - AZOBR_RS23305 0.35 -1.5 254,729 - AZOBR_RS23305 0.35 +0.9 255,092 - AZOBR_RS23305 0.72 +0.3 255,134 - AZOBR_RS23305 0.76 -2.3 255,355 + -0.7 255,356 - +0.6 255,364 + -1.8 255,364 + -1.0 255,364 + +0.0 255,364 + -0.0 255,364 + +0.1 255,364 + -1.1 255,364 + +0.2 255,364 + +3.9 255,364 + +0.8 255,368 + +3.0 255,369 - -1.6 255,703 - AZOBR_RS23310 0.31 +1.2 255,703 - AZOBR_RS23310 0.31 -2.4 256,252 - AZOBR_RS23310 0.87 +2.8 256,252 - AZOBR_RS23310 0.87 -0.7 256,291 - -0.7 256,496 + AZOBR_RS23315 0.13 -3.3 256,709 + AZOBR_RS23315 0.57 -1.9 256,709 + AZOBR_RS23315 0.57 -2.7 256,710 - AZOBR_RS23315 0.57 +0.5 256,710 - AZOBR_RS23315 0.57 -3.2 256,867 - AZOBR_RS23315 0.89 +0.4 256,867 - AZOBR_RS23315 0.89 +1.7 256,867 - AZOBR_RS23315 0.89 -0.3 256,911 + +0.2 256,911 + -2.9 256,912 - +1.6 256,922 + +1.1 256,987 + +0.6 256,987 + -1.3 256,987 + -0.2 256,987 + -0.9 256,987 + -1.4 256,987 + +1.1 256,987 + -0.1 256,988 - +1.5 257,179 + AZOBR_RS23320 0.18 -2.1 257,179 + AZOBR_RS23320 0.18 -0.6 257,179 + AZOBR_RS23320 0.18 -1.4
Or see this region's nucleotide sequence