Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18550

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18540 and AZOBR_RS18545 are separated by 194 nucleotidesAZOBR_RS18545 and AZOBR_RS18550 are separated by 19 nucleotidesAZOBR_RS18550 and AZOBR_RS18555 are separated by 13 nucleotides AZOBR_RS18540: AZOBR_RS18540 - endoribonuclease L-PSP, at 928,363 to 928,761 _RS18540 AZOBR_RS18545: AZOBR_RS18545 - putative two-component response regulator:antitermination factor NasT, at 928,956 to 929,573 _RS18545 AZOBR_RS18550: AZOBR_RS18550 - ABC transporter for nitrate, ATPase component (from data), at 929,593 to 931,257 _RS18550 AZOBR_RS18555: AZOBR_RS18555 - ABC transporter for nitrate, permease component (from data), at 931,271 to 932,362 _RS18555 Position (kb) 929 930 931 932Strain fitness (log2 ratio) -2 -1 0 1 2at 929.047 kb on + strand, within AZOBR_RS18545at 929.660 kb on + strandat 929.661 kb on - strandat 929.664 kb on - strandat 929.725 kb on - strandat 930.026 kb on + strand, within AZOBR_RS18550at 930.027 kb on - strand, within AZOBR_RS18550at 930.027 kb on - strand, within AZOBR_RS18550at 930.377 kb on + strand, within AZOBR_RS18550at 930.378 kb on - strand, within AZOBR_RS18550at 930.416 kb on + strand, within AZOBR_RS18550at 930.417 kb on - strand, within AZOBR_RS18550at 931.017 kb on - strand, within AZOBR_RS18550at 931.017 kb on - strand, within AZOBR_RS18550at 931.510 kb on - strand, within AZOBR_RS18555at 931.510 kb on - strand, within AZOBR_RS18555at 931.510 kb on - strand, within AZOBR_RS18555at 931.510 kb on - strand, within AZOBR_RS18555at 931.510 kb on - strand, within AZOBR_RS18555at 931.908 kb on + strand, within AZOBR_RS18555at 931.908 kb on + strand, within AZOBR_RS18555at 931.908 kb on + strand, within AZOBR_RS18555at 931.908 kb on + strand, within AZOBR_RS18555at 931.909 kb on - strand, within AZOBR_RS18555at 931.909 kb on - strand, within AZOBR_RS18555at 931.999 kb on - strand, within AZOBR_RS18555at 931.999 kb on - strand, within AZOBR_RS18555

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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929,047 + AZOBR_RS18545 0.15 -1.5
929,660 + +0.3
929,661 - -0.2
929,664 - -1.1
929,725 - -1.9
930,026 + AZOBR_RS18550 0.26 -0.8
930,027 - AZOBR_RS18550 0.26 +0.5
930,027 - AZOBR_RS18550 0.26 -0.1
930,377 + AZOBR_RS18550 0.47 -0.9
930,378 - AZOBR_RS18550 0.47 -0.7
930,416 + AZOBR_RS18550 0.49 -0.3
930,417 - AZOBR_RS18550 0.49 -0.9
931,017 - AZOBR_RS18550 0.86 +0.3
931,017 - AZOBR_RS18550 0.86 -0.3
931,510 - AZOBR_RS18555 0.22 +1.7
931,510 - AZOBR_RS18555 0.22 -0.3
931,510 - AZOBR_RS18555 0.22 -1.0
931,510 - AZOBR_RS18555 0.22 -0.1
931,510 - AZOBR_RS18555 0.22 -0.8
931,908 + AZOBR_RS18555 0.58 -0.8
931,908 + AZOBR_RS18555 0.58 -2.1
931,908 + AZOBR_RS18555 0.58 +1.9
931,908 + AZOBR_RS18555 0.58 +0.1
931,909 - AZOBR_RS18555 0.58 -0.1
931,909 - AZOBR_RS18555 0.58 +0.4
931,999 - AZOBR_RS18555 0.67 +1.3
931,999 - AZOBR_RS18555 0.67 +0.3

Or see this region's nucleotide sequence