Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16990 and AZOBR_RS16995 are separated by 279 nucleotides AZOBR_RS16995 and AZOBR_RS17000 are separated by 68 nucleotides AZOBR_RS17000 and AZOBR_RS17005 are separated by 298 nucleotides
AZOBR_RS16990: AZOBR_RS16990 - regulator, at 567,209 to 567,643
_RS16990
AZOBR_RS16995: AZOBR_RS16995 - hydrolase, at 567,923 to 568,471
_RS16995
AZOBR_RS17000: AZOBR_RS17000 - 1-deoxy-D-xylulose-5-phosphate synthase, at 568,540 to 570,471
_RS17000
AZOBR_RS17005: AZOBR_RS17005 - radical SAM protein, at 570,770 to 571,897
_RS17005
Position (kb) 568
569
570
571 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 567.698 kb on - strand at 567.750 kb on + strand at 568.035 kb on + strand, within AZOBR_RS16995 at 568.035 kb on + strand, within AZOBR_RS16995 at 568.035 kb on + strand, within AZOBR_RS16995 at 568.036 kb on - strand, within AZOBR_RS16995 at 568.036 kb on - strand, within AZOBR_RS16995 at 568.036 kb on - strand, within AZOBR_RS16995 at 568.088 kb on + strand, within AZOBR_RS16995 at 568.427 kb on + strand at 568.427 kb on + strand at 568.428 kb on - strand at 568.428 kb on - strand at 568.428 kb on - strand at 568.428 kb on - strand at 568.428 kb on - strand at 569.768 kb on + strand, within AZOBR_RS17000 at 569.883 kb on - strand, within AZOBR_RS17000 at 569.985 kb on - strand, within AZOBR_RS17000 at 570.122 kb on + strand, within AZOBR_RS17000 at 570.122 kb on + strand, within AZOBR_RS17000 at 570.135 kb on + strand, within AZOBR_RS17000 at 570.136 kb on - strand, within AZOBR_RS17000 at 570.136 kb on - strand, within AZOBR_RS17000 at 570.136 kb on - strand, within AZOBR_RS17000 at 570.219 kb on - strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.272 kb on + strand, within AZOBR_RS17000 at 570.273 kb on - strand, within AZOBR_RS17000 at 570.273 kb on - strand, within AZOBR_RS17000 at 570.273 kb on - strand, within AZOBR_RS17000 at 570.491 kb on - strand at 570.502 kb on + strand at 570.503 kb on - strand at 570.503 kb on - strand at 570.503 kb on - strand at 570.610 kb on + strand at 570.611 kb on - strand at 570.611 kb on - strand at 570.615 kb on + strand at 570.615 kb on + strand at 570.616 kb on - strand at 570.620 kb on + strand at 570.620 kb on + strand at 570.621 kb on - strand at 570.621 kb on - strand at 570.621 kb on - strand at 570.621 kb on - strand at 570.625 kb on + strand at 570.625 kb on + strand at 570.625 kb on + strand at 570.626 kb on - strand at 570.809 kb on + strand at 570.809 kb on + strand at 570.810 kb on - strand at 570.810 kb on - strand at 570.917 kb on + strand, within AZOBR_RS17005 at 571.079 kb on + strand, within AZOBR_RS17005 at 571.079 kb on + strand, within AZOBR_RS17005 at 571.211 kb on + strand, within AZOBR_RS17005 at 571.211 kb on + strand, within AZOBR_RS17005 at 571.370 kb on + strand, within AZOBR_RS17005 at 571.376 kb on + strand, within AZOBR_RS17005
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 567,698 - +0.6 567,750 + +0.7 568,035 + AZOBR_RS16995 0.20 +1.2 568,035 + AZOBR_RS16995 0.20 +0.5 568,035 + AZOBR_RS16995 0.20 -0.9 568,036 - AZOBR_RS16995 0.21 +0.0 568,036 - AZOBR_RS16995 0.21 -1.1 568,036 - AZOBR_RS16995 0.21 -0.9 568,088 + AZOBR_RS16995 0.30 -0.1 568,427 + +1.2 568,427 + +0.3 568,428 - +0.0 568,428 - -1.7 568,428 - -0.7 568,428 - -1.0 568,428 - -0.9 569,768 + AZOBR_RS17000 0.64 -0.5 569,883 - AZOBR_RS17000 0.70 -0.2 569,985 - AZOBR_RS17000 0.75 +0.9 570,122 + AZOBR_RS17000 0.82 +0.2 570,122 + AZOBR_RS17000 0.82 -0.0 570,135 + AZOBR_RS17000 0.83 +0.4 570,136 - AZOBR_RS17000 0.83 -2.9 570,136 - AZOBR_RS17000 0.83 +0.0 570,136 - AZOBR_RS17000 0.83 -2.6 570,219 - AZOBR_RS17000 0.87 +1.6 570,272 + AZOBR_RS17000 0.90 -1.2 570,272 + AZOBR_RS17000 0.90 -0.2 570,272 + AZOBR_RS17000 0.90 +0.0 570,272 + AZOBR_RS17000 0.90 -0.6 570,272 + AZOBR_RS17000 0.90 -2.4 570,272 + AZOBR_RS17000 0.90 -1.2 570,272 + AZOBR_RS17000 0.90 -0.4 570,273 - AZOBR_RS17000 0.90 -1.8 570,273 - AZOBR_RS17000 0.90 -2.8 570,273 - AZOBR_RS17000 0.90 -0.3 570,491 - -2.0 570,502 + -0.3 570,503 - +0.0 570,503 - -0.9 570,503 - +0.4 570,610 + +1.0 570,611 - +0.6 570,611 - +0.4 570,615 + -2.9 570,615 + +0.6 570,616 - +1.3 570,620 + +1.9 570,620 + -1.5 570,621 - +0.4 570,621 - -0.2 570,621 - -0.4 570,621 - -0.7 570,625 + -0.0 570,625 + -1.5 570,625 + -0.5 570,626 - -0.1 570,809 + +0.4 570,809 + +0.1 570,810 - +0.3 570,810 - +0.0 570,917 + AZOBR_RS17005 0.13 -1.3 571,079 + AZOBR_RS17005 0.27 +0.1 571,079 + AZOBR_RS17005 0.27 +0.6 571,211 + AZOBR_RS17005 0.39 +1.4 571,211 + AZOBR_RS17005 0.39 +0.4 571,370 + AZOBR_RS17005 0.53 -0.4 571,376 + AZOBR_RS17005 0.54 -0.6
Or see this region's nucleotide sequence