Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS15375 and AZOBR_RS15380 are separated by 185 nucleotides AZOBR_RS15380 and AZOBR_RS15385 are separated by 141 nucleotides AZOBR_RS15385 and AZOBR_RS15390 are separated by 119 nucleotides
AZOBR_RS15375: AZOBR_RS15375 - hypothetical protein, at 211,664 to 211,864
_RS15375
AZOBR_RS15380: AZOBR_RS15380 - hypothetical protein, at 212,050 to 212,526
_RS15380
AZOBR_RS15385: AZOBR_RS15385 - tRNA (uracil-5-)-methyltransferase, at 212,668 to 214,032
_RS15385
AZOBR_RS15390: AZOBR_RS15390 - chemotaxis protein, at 214,152 to 216,230
_RS15390
Position (kb) 212
213
214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 211.785 kb on - strand, within AZOBR_RS15375 at 211.961 kb on + strand at 211.990 kb on - strand at 212.362 kb on + strand, within AZOBR_RS15380 at 212.425 kb on + strand, within AZOBR_RS15380 at 212.635 kb on + strand at 212.635 kb on + strand at 212.635 kb on + strand at 212.866 kb on + strand, within AZOBR_RS15385 at 212.867 kb on - strand, within AZOBR_RS15385 at 213.188 kb on - strand, within AZOBR_RS15385 at 213.188 kb on - strand, within AZOBR_RS15385 at 213.269 kb on - strand, within AZOBR_RS15385 at 213.431 kb on - strand, within AZOBR_RS15385 at 213.532 kb on + strand, within AZOBR_RS15385 at 213.533 kb on - strand, within AZOBR_RS15385 at 213.746 kb on - strand, within AZOBR_RS15385 at 213.746 kb on - strand, within AZOBR_RS15385 at 213.746 kb on - strand, within AZOBR_RS15385 at 213.890 kb on - strand, within AZOBR_RS15385 at 214.151 kb on + strand at 214.561 kb on - strand, within AZOBR_RS15390 at 214.609 kb on - strand, within AZOBR_RS15390 at 214.635 kb on + strand, within AZOBR_RS15390 at 214.635 kb on + strand, within AZOBR_RS15390 at 214.636 kb on - strand, within AZOBR_RS15390 at 214.689 kb on + strand, within AZOBR_RS15390 at 214.689 kb on + strand, within AZOBR_RS15390 at 214.689 kb on + strand, within AZOBR_RS15390 at 214.689 kb on + strand, within AZOBR_RS15390 at 214.690 kb on - strand, within AZOBR_RS15390 at 214.690 kb on - strand, within AZOBR_RS15390 at 214.690 kb on - strand, within AZOBR_RS15390
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 211,785 - AZOBR_RS15375 0.60 +0.9 211,961 + +0.2 211,990 - -0.9 212,362 + AZOBR_RS15380 0.65 -0.2 212,425 + AZOBR_RS15380 0.79 +0.5 212,635 + -0.5 212,635 + +0.1 212,635 + -1.6 212,866 + AZOBR_RS15385 0.15 +1.3 212,867 - AZOBR_RS15385 0.15 -0.5 213,188 - AZOBR_RS15385 0.38 -0.2 213,188 - AZOBR_RS15385 0.38 +0.6 213,269 - AZOBR_RS15385 0.44 -2.0 213,431 - AZOBR_RS15385 0.56 -1.4 213,532 + AZOBR_RS15385 0.63 +3.8 213,533 - AZOBR_RS15385 0.63 -0.5 213,746 - AZOBR_RS15385 0.79 +2.9 213,746 - AZOBR_RS15385 0.79 +0.3 213,746 - AZOBR_RS15385 0.79 +0.3 213,890 - AZOBR_RS15385 0.90 -3.5 214,151 + -1.5 214,561 - AZOBR_RS15390 0.20 -0.8 214,609 - AZOBR_RS15390 0.22 -2.3 214,635 + AZOBR_RS15390 0.23 +1.5 214,635 + AZOBR_RS15390 0.23 -0.2 214,636 - AZOBR_RS15390 0.23 -2.9 214,689 + AZOBR_RS15390 0.26 +0.4 214,689 + AZOBR_RS15390 0.26 +1.3 214,689 + AZOBR_RS15390 0.26 -0.1 214,689 + AZOBR_RS15390 0.26 +2.5 214,690 - AZOBR_RS15390 0.26 -1.0 214,690 - AZOBR_RS15390 0.26 -0.8 214,690 - AZOBR_RS15390 0.26 -1.5
Or see this region's nucleotide sequence