Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05805

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS05800 and AZOBR_RS05805 are separated by 347 nucleotidesAZOBR_RS05805 and AZOBR_RS05810 are separated by 549 nucleotides AZOBR_RS05800: AZOBR_RS05800 - membrane protein, at 1,231,136 to 1,234,768 _RS05800 AZOBR_RS05805: AZOBR_RS05805 - hypothetical protein, at 1,235,116 to 1,236,099 _RS05805 AZOBR_RS05810: AZOBR_RS05810 - tyrosyl-tRNA synthetase, at 1,236,649 to 1,237,902 _RS05810 Position (kb) 1235 1236 1237Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1234.133 kb on + strand, within AZOBR_RS05800at 1234.134 kb on - strand, within AZOBR_RS05800at 1234.134 kb on - strand, within AZOBR_RS05800at 1234.286 kb on + strand, within AZOBR_RS05800at 1234.286 kb on + strand, within AZOBR_RS05800at 1234.535 kb on + strandat 1234.536 kb on - strandat 1234.536 kb on - strandat 1234.536 kb on - strandat 1234.536 kb on - strandat 1234.859 kb on + strandat 1234.859 kb on + strandat 1234.859 kb on + strandat 1234.859 kb on + strandat 1234.859 kb on + strandat 1234.859 kb on + strandat 1234.859 kb on + strandat 1234.859 kb on + strandat 1234.859 kb on + strandat 1234.860 kb on - strandat 1234.860 kb on - strandat 1234.860 kb on - strandat 1234.860 kb on - strandat 1234.860 kb on - strandat 1234.860 kb on - strandat 1234.932 kb on + strandat 1234.982 kb on + strandat 1234.982 kb on + strandat 1234.983 kb on - strandat 1234.983 kb on - strandat 1234.983 kb on - strandat 1234.983 kb on - strandat 1235.315 kb on + strand, within AZOBR_RS05805at 1235.380 kb on + strand, within AZOBR_RS05805at 1235.380 kb on + strand, within AZOBR_RS05805at 1235.381 kb on - strand, within AZOBR_RS05805at 1235.381 kb on - strand, within AZOBR_RS05805at 1235.381 kb on - strand, within AZOBR_RS05805at 1235.381 kb on - strand, within AZOBR_RS05805at 1235.613 kb on - strand, within AZOBR_RS05805at 1235.613 kb on - strand, within AZOBR_RS05805at 1235.807 kb on + strand, within AZOBR_RS05805at 1235.996 kb on - strand, within AZOBR_RS05805at 1236.323 kb on - strandat 1236.372 kb on + strandat 1236.418 kb on - strandat 1236.418 kb on - strandat 1236.419 kb on + strandat 1236.420 kb on - strandat 1236.691 kb on + strandat 1236.692 kb on - strandat 1236.692 kb on - strandat 1237.076 kb on + strand, within AZOBR_RS05810at 1237.077 kb on - strand, within AZOBR_RS05810

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
remove
1,234,133 + AZOBR_RS05800 0.82 +0.6
1,234,134 - AZOBR_RS05800 0.83 -1.8
1,234,134 - AZOBR_RS05800 0.83 +0.2
1,234,286 + AZOBR_RS05800 0.87 -3.1
1,234,286 + AZOBR_RS05800 0.87 +2.6
1,234,535 + +1.2
1,234,536 - -1.0
1,234,536 - -1.9
1,234,536 - +0.3
1,234,536 - -0.4
1,234,859 + -0.5
1,234,859 + +0.8
1,234,859 + -0.7
1,234,859 + -1.4
1,234,859 + +1.3
1,234,859 + -0.2
1,234,859 + -1.7
1,234,859 + +1.1
1,234,859 + -1.4
1,234,860 - -0.2
1,234,860 - -0.4
1,234,860 - +0.3
1,234,860 - -2.5
1,234,860 - +0.5
1,234,860 - +3.6
1,234,932 + -0.1
1,234,982 + +1.0
1,234,982 + +1.7
1,234,983 - +0.7
1,234,983 - +0.1
1,234,983 - -2.2
1,234,983 - +1.3
1,235,315 + AZOBR_RS05805 0.20 +0.1
1,235,380 + AZOBR_RS05805 0.27 -2.1
1,235,380 + AZOBR_RS05805 0.27 +0.7
1,235,381 - AZOBR_RS05805 0.27 +2.4
1,235,381 - AZOBR_RS05805 0.27 +0.2
1,235,381 - AZOBR_RS05805 0.27 -0.1
1,235,381 - AZOBR_RS05805 0.27 +2.0
1,235,613 - AZOBR_RS05805 0.51 -1.3
1,235,613 - AZOBR_RS05805 0.51 -0.4
1,235,807 + AZOBR_RS05805 0.70 +0.5
1,235,996 - AZOBR_RS05805 0.89 -2.4
1,236,323 - +0.3
1,236,372 + +3.3
1,236,418 - +2.7
1,236,418 - +0.9
1,236,419 + -2.0
1,236,420 - -1.1
1,236,691 + -2.7
1,236,692 - +1.6
1,236,692 - -0.7
1,237,076 + AZOBR_RS05810 0.34 -0.4
1,237,077 - AZOBR_RS05810 0.34 +0.3

Or see this region's nucleotide sequence