Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05175

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS05165 and AZOBR_RS05170 are separated by 153 nucleotidesAZOBR_RS05170 and AZOBR_RS05175 are separated by 79 nucleotidesAZOBR_RS05175 and AZOBR_RS05180 are separated by 8 nucleotidesAZOBR_RS05180 and AZOBR_RS05185 are separated by 455 nucleotides AZOBR_RS05165: AZOBR_RS05165 - carnitine dehydratase, at 1,099,412 to 1,100,524 _RS05165 AZOBR_RS05170: AZOBR_RS05170 - hypothetical protein, at 1,100,678 to 1,100,869 _RS05170 AZOBR_RS05175: AZOBR_RS05175 - ATP-dependent Clp protease ATP-binding protein, at 1,100,949 to 1,103,264 _RS05175 AZOBR_RS05180: AZOBR_RS05180 - Clp protease ClpS, at 1,103,273 to 1,103,599 _RS05180 AZOBR_RS05185: AZOBR_RS05185 - hypothetical protein, at 1,104,055 to 1,104,540 _RS05185 Position (kb) 1100 1101 1102 1103 1104Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1100.095 kb on + strand, within AZOBR_RS05165at 1100.095 kb on + strand, within AZOBR_RS05165at 1100.097 kb on + strand, within AZOBR_RS05165at 1100.097 kb on + strand, within AZOBR_RS05165at 1100.097 kb on + strand, within AZOBR_RS05165at 1100.097 kb on + strand, within AZOBR_RS05165at 1100.097 kb on + strand, within AZOBR_RS05165at 1100.097 kb on + strand, within AZOBR_RS05165at 1100.097 kb on + strand, within AZOBR_RS05165at 1100.098 kb on - strand, within AZOBR_RS05165at 1100.098 kb on - strand, within AZOBR_RS05165at 1100.098 kb on - strand, within AZOBR_RS05165at 1100.098 kb on - strand, within AZOBR_RS05165at 1100.098 kb on - strand, within AZOBR_RS05165at 1100.235 kb on + strand, within AZOBR_RS05165at 1100.347 kb on - strand, within AZOBR_RS05165at 1100.461 kb on - strandat 1100.476 kb on - strandat 1100.703 kb on - strand, within AZOBR_RS05170at 1100.703 kb on - strand, within AZOBR_RS05170at 1100.789 kb on + strand, within AZOBR_RS05170at 1101.680 kb on + strand, within AZOBR_RS05175at 1101.683 kb on - strand, within AZOBR_RS05175at 1101.683 kb on - strand, within AZOBR_RS05175at 1101.781 kb on + strand, within AZOBR_RS05175at 1101.781 kb on + strand, within AZOBR_RS05175at 1101.782 kb on - strandat 1101.782 kb on - strand, within AZOBR_RS05175at 1101.782 kb on - strandat 1101.782 kb on - strand, within AZOBR_RS05175at 1102.091 kb on - strand, within AZOBR_RS05175at 1102.135 kb on + strandat 1102.162 kb on + strand, within AZOBR_RS05175at 1102.162 kb on + strandat 1102.264 kb on + strand, within AZOBR_RS05175at 1102.283 kb on - strand, within AZOBR_RS05175at 1102.619 kb on - strand, within AZOBR_RS05175at 1102.746 kb on + strand, within AZOBR_RS05175at 1102.858 kb on + strand, within AZOBR_RS05175at 1103.084 kb on - strandat 1103.194 kb on + strandat 1103.563 kb on + strand, within AZOBR_RS05180at 1103.626 kb on + strandat 1103.812 kb on + strandat 1103.812 kb on + strandat 1103.812 kb on + strandat 1103.812 kb on + strandat 1103.813 kb on - strandat 1103.813 kb on - strandat 1103.903 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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1,100,095 + AZOBR_RS05165 0.61 +0.5
1,100,095 + AZOBR_RS05165 0.61 -0.5
1,100,097 + AZOBR_RS05165 0.62 +1.1
1,100,097 + AZOBR_RS05165 0.62 +0.1
1,100,097 + AZOBR_RS05165 0.62 -0.1
1,100,097 + AZOBR_RS05165 0.62 +0.0
1,100,097 + AZOBR_RS05165 0.62 -0.3
1,100,097 + AZOBR_RS05165 0.62 +0.3
1,100,097 + AZOBR_RS05165 0.62 +1.2
1,100,098 - AZOBR_RS05165 0.62 +0.7
1,100,098 - AZOBR_RS05165 0.62 -1.3
1,100,098 - AZOBR_RS05165 0.62 +1.1
1,100,098 - AZOBR_RS05165 0.62 +1.5
1,100,098 - AZOBR_RS05165 0.62 +0.0
1,100,235 + AZOBR_RS05165 0.74 +1.5
1,100,347 - AZOBR_RS05165 0.84 -1.4
1,100,461 - -0.2
1,100,476 - -1.8
1,100,703 - AZOBR_RS05170 0.13 -0.3
1,100,703 - AZOBR_RS05170 0.13 -2.5
1,100,789 + AZOBR_RS05170 0.58 -2.3
1,101,680 + AZOBR_RS05175 0.32 -0.6
1,101,683 - AZOBR_RS05175 0.32 +0.6
1,101,683 - AZOBR_RS05175 0.32 +1.0
1,101,781 + AZOBR_RS05175 0.36 +2.9
1,101,781 + AZOBR_RS05175 0.36 +2.6
1,101,782 - +1.6
1,101,782 - AZOBR_RS05175 0.36 -0.2
1,101,782 - +2.5
1,101,782 - AZOBR_RS05175 0.36 +0.7
1,102,091 - AZOBR_RS05175 0.49 +0.3
1,102,135 + +1.0
1,102,162 + AZOBR_RS05175 0.52 +1.9
1,102,162 + +1.0
1,102,264 + AZOBR_RS05175 0.57 -0.6
1,102,283 - AZOBR_RS05175 0.58 +0.2
1,102,619 - AZOBR_RS05175 0.72 +1.8
1,102,746 + AZOBR_RS05175 0.78 -1.8
1,102,858 + AZOBR_RS05175 0.82 -1.0
1,103,084 - -1.5
1,103,194 + +0.2
1,103,563 + AZOBR_RS05180 0.89 -0.2
1,103,626 + -0.5
1,103,812 + +0.4
1,103,812 + -1.2
1,103,812 + +0.2
1,103,812 + -0.2
1,103,813 - -3.3
1,103,813 - -0.6
1,103,903 + +1.5

Or see this region's nucleotide sequence