Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04245

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS04240 and AZOBR_RS04245 are separated by 4 nucleotidesAZOBR_RS04245 and AZOBR_RS04250 are separated by 330 nucleotides AZOBR_RS04240: AZOBR_RS04240 - cysteinyl-tRNA synthetase, at 893,492 to 894,865 _RS04240 AZOBR_RS04245: AZOBR_RS04245 - putative acyltransferase 3, at 894,870 to 896,066 _RS04245 AZOBR_RS04250: AZOBR_RS04250 - preQ0 transporter, at 896,397 to 896,861 _RS04250 Position (kb) 894 895 896 897Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 894.871 kb on + strandat 894.871 kb on + strandat 895.114 kb on + strand, within AZOBR_RS04245at 895.115 kb on - strand, within AZOBR_RS04245at 895.123 kb on + strand, within AZOBR_RS04245at 895.124 kb on - strand, within AZOBR_RS04245at 895.124 kb on - strand, within AZOBR_RS04245at 895.124 kb on - strand, within AZOBR_RS04245at 895.124 kb on - strand, within AZOBR_RS04245at 895.306 kb on + strand, within AZOBR_RS04245at 895.307 kb on - strand, within AZOBR_RS04245at 895.307 kb on - strand, within AZOBR_RS04245at 895.307 kb on - strand, within AZOBR_RS04245at 895.658 kb on - strand, within AZOBR_RS04245at 896.076 kb on + strandat 896.203 kb on + strandat 896.203 kb on + strandat 896.203 kb on + strandat 896.308 kb on - strandat 896.365 kb on - strandat 896.416 kb on - strandat 896.416 kb on - strandat 896.416 kb on - strandat 896.416 kb on - strandat 896.428 kb on + strandat 896.429 kb on - strandat 896.443 kb on - strandat 896.533 kb on - strand, within AZOBR_RS04250

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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894,871 + +0.8
894,871 + +2.0
895,114 + AZOBR_RS04245 0.20 -0.9
895,115 - AZOBR_RS04245 0.20 -0.1
895,123 + AZOBR_RS04245 0.21 -1.4
895,124 - AZOBR_RS04245 0.21 -0.2
895,124 - AZOBR_RS04245 0.21 -2.5
895,124 - AZOBR_RS04245 0.21 +0.8
895,124 - AZOBR_RS04245 0.21 +1.0
895,306 + AZOBR_RS04245 0.36 +0.6
895,307 - AZOBR_RS04245 0.37 +0.4
895,307 - AZOBR_RS04245 0.37 -0.2
895,307 - AZOBR_RS04245 0.37 -1.4
895,658 - AZOBR_RS04245 0.66 +0.0
896,076 + +1.2
896,203 + -2.5
896,203 + -0.6
896,203 + -0.0
896,308 - +0.5
896,365 - -2.6
896,416 - +0.2
896,416 - -0.6
896,416 - -1.1
896,416 - +1.2
896,428 + -0.2
896,429 - -1.5
896,443 - -2.9
896,533 - AZOBR_RS04250 0.29 +0.2

Or see this region's nucleotide sequence