Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02990 and AZOBR_RS02995 are separated by 442 nucleotides AZOBR_RS02995 and AZOBR_RS03000 are separated by 168 nucleotides AZOBR_RS03000 and AZOBR_RS03005 are separated by 87 nucleotides
AZOBR_RS02990: AZOBR_RS02990 - hypothetical protein, at 636,593 to 638,194
_RS02990
AZOBR_RS02995: AZOBR_RS02995 - transcriptional regulator, at 638,637 to 639,491
_RS02995
AZOBR_RS03000: AZOBR_RS03000 - hypothetical protein, at 639,660 to 640,034
_RS03000
AZOBR_RS03005: AZOBR_RS03005 - hypothetical protein, at 640,122 to 641,219
_RS03005
Position (kb) 638
639
640 Strain fitness (log2 ratio) -2
-1
0
1
2 at 637.764 kb on + strand, within AZOBR_RS02990 at 637.764 kb on + strand, within AZOBR_RS02990 at 637.765 kb on - strand, within AZOBR_RS02990 at 637.852 kb on - strand, within AZOBR_RS02990 at 638.001 kb on + strand, within AZOBR_RS02990 at 638.001 kb on + strand, within AZOBR_RS02990 at 638.001 kb on + strand, within AZOBR_RS02990 at 638.002 kb on - strand, within AZOBR_RS02990 at 638.002 kb on - strand, within AZOBR_RS02990 at 638.100 kb on + strand at 638.101 kb on - strand at 638.188 kb on - strand at 638.188 kb on - strand at 638.188 kb on - strand at 638.280 kb on + strand at 638.687 kb on - strand at 638.687 kb on - strand at 638.893 kb on + strand, within AZOBR_RS02995 at 638.893 kb on + strand, within AZOBR_RS02995 at 638.894 kb on - strand, within AZOBR_RS02995 at 639.110 kb on - strand, within AZOBR_RS02995 at 639.777 kb on + strand, within AZOBR_RS03000 at 639.778 kb on - strand, within AZOBR_RS03000 at 639.795 kb on + strand, within AZOBR_RS03000 at 639.795 kb on + strand, within AZOBR_RS03000 at 639.795 kb on + strand, within AZOBR_RS03000 at 639.796 kb on - strand, within AZOBR_RS03000 at 639.796 kb on - strand, within AZOBR_RS03000 at 639.796 kb on - strand, within AZOBR_RS03000 at 639.964 kb on - strand, within AZOBR_RS03000
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 637,764 + AZOBR_RS02990 0.73 -0.9 637,764 + AZOBR_RS02990 0.73 +0.9 637,765 - AZOBR_RS02990 0.73 -1.3 637,852 - AZOBR_RS02990 0.79 -0.0 638,001 + AZOBR_RS02990 0.88 +0.1 638,001 + AZOBR_RS02990 0.88 +0.5 638,001 + AZOBR_RS02990 0.88 -0.6 638,002 - AZOBR_RS02990 0.88 -2.1 638,002 - AZOBR_RS02990 0.88 +0.9 638,100 + -0.4 638,101 - +1.6 638,188 - +1.1 638,188 - +1.5 638,188 - +0.5 638,280 + +1.1 638,687 - -1.5 638,687 - -0.7 638,893 + AZOBR_RS02995 0.30 -0.0 638,893 + AZOBR_RS02995 0.30 -0.8 638,894 - AZOBR_RS02995 0.30 -1.4 639,110 - AZOBR_RS02995 0.55 -2.7 639,777 + AZOBR_RS03000 0.31 -0.9 639,778 - AZOBR_RS03000 0.31 -2.7 639,795 + AZOBR_RS03000 0.36 -1.6 639,795 + AZOBR_RS03000 0.36 +0.5 639,795 + AZOBR_RS03000 0.36 +1.3 639,796 - AZOBR_RS03000 0.36 +2.7 639,796 - AZOBR_RS03000 0.36 +0.5 639,796 - AZOBR_RS03000 0.36 -0.1 639,964 - AZOBR_RS03000 0.81 +0.0
Or see this region's nucleotide sequence