Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02975 and AZOBR_RS02980 are separated by 7 nucleotides AZOBR_RS02980 and AZOBR_RS02985 are separated by 248 nucleotides
AZOBR_RS02975: AZOBR_RS02975 - hypothetical protein, at 630,941 to 631,960
_RS02975
AZOBR_RS02980: AZOBR_RS02980 - ABC transporter permease, at 631,968 to 633,296
_RS02980
AZOBR_RS02985: AZOBR_RS02985 - aconitate hydratase, at 633,545 to 636,235
_RS02985
Position (kb) 631
632
633
634 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 631.020 kb on - strand at 631.379 kb on + strand, within AZOBR_RS02975 at 631.379 kb on + strand, within AZOBR_RS02975 at 631.379 kb on + strand, within AZOBR_RS02975 at 631.380 kb on - strand, within AZOBR_RS02975 at 631.380 kb on - strand, within AZOBR_RS02975 at 631.380 kb on - strand, within AZOBR_RS02975 at 631.380 kb on - strand, within AZOBR_RS02975 at 631.700 kb on + strand, within AZOBR_RS02975 at 631.701 kb on - strand, within AZOBR_RS02975 at 632.162 kb on + strand, within AZOBR_RS02980 at 632.162 kb on + strand, within AZOBR_RS02980 at 632.162 kb on + strand, within AZOBR_RS02980 at 632.163 kb on - strand, within AZOBR_RS02980 at 632.323 kb on + strand, within AZOBR_RS02980 at 632.443 kb on + strand, within AZOBR_RS02980 at 632.443 kb on + strand, within AZOBR_RS02980 at 632.444 kb on - strand, within AZOBR_RS02980 at 632.444 kb on - strand, within AZOBR_RS02980 at 632.743 kb on + strand, within AZOBR_RS02980 at 632.743 kb on + strand, within AZOBR_RS02980 at 632.744 kb on - strand, within AZOBR_RS02980 at 632.750 kb on - strand, within AZOBR_RS02980 at 632.750 kb on - strand, within AZOBR_RS02980 at 632.750 kb on - strand, within AZOBR_RS02980 at 632.750 kb on - strand, within AZOBR_RS02980 at 632.833 kb on + strand, within AZOBR_RS02980 at 632.834 kb on - strand, within AZOBR_RS02980 at 632.834 kb on - strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.950 kb on + strand, within AZOBR_RS02980 at 632.951 kb on - strand, within AZOBR_RS02980 at 633.020 kb on - strand, within AZOBR_RS02980 at 633.046 kb on + strand, within AZOBR_RS02980 at 633.047 kb on - strand, within AZOBR_RS02980 at 633.047 kb on - strand, within AZOBR_RS02980 at 633.121 kb on + strand, within AZOBR_RS02980 at 633.122 kb on - strand, within AZOBR_RS02980 at 633.366 kb on + strand at 633.367 kb on - strand at 633.370 kb on - strand at 633.468 kb on + strand at 633.469 kb on - strand at 633.611 kb on + strand at 633.612 kb on - strand at 633.618 kb on - strand at 633.675 kb on - strand at 633.960 kb on - strand, within AZOBR_RS02985 at 634.115 kb on + strand, within AZOBR_RS02985 at 634.115 kb on + strand, within AZOBR_RS02985
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 631,020 - +1.5 631,379 + AZOBR_RS02975 0.43 +0.3 631,379 + AZOBR_RS02975 0.43 -0.1 631,379 + AZOBR_RS02975 0.43 +1.4 631,380 - AZOBR_RS02975 0.43 +1.3 631,380 - AZOBR_RS02975 0.43 -0.4 631,380 - AZOBR_RS02975 0.43 +0.6 631,380 - AZOBR_RS02975 0.43 +0.4 631,700 + AZOBR_RS02975 0.74 -0.9 631,701 - AZOBR_RS02975 0.75 -0.2 632,162 + AZOBR_RS02980 0.15 +0.2 632,162 + AZOBR_RS02980 0.15 -1.0 632,162 + AZOBR_RS02980 0.15 -0.6 632,163 - AZOBR_RS02980 0.15 +0.9 632,323 + AZOBR_RS02980 0.27 +0.8 632,443 + AZOBR_RS02980 0.36 -0.6 632,443 + AZOBR_RS02980 0.36 -0.6 632,444 - AZOBR_RS02980 0.36 -1.0 632,444 - AZOBR_RS02980 0.36 -0.5 632,743 + AZOBR_RS02980 0.58 +1.1 632,743 + AZOBR_RS02980 0.58 -0.2 632,744 - AZOBR_RS02980 0.58 -1.3 632,750 - AZOBR_RS02980 0.59 -1.8 632,750 - AZOBR_RS02980 0.59 -0.5 632,750 - AZOBR_RS02980 0.59 +0.1 632,750 - AZOBR_RS02980 0.59 +1.2 632,833 + AZOBR_RS02980 0.65 -1.1 632,834 - AZOBR_RS02980 0.65 +0.1 632,834 - AZOBR_RS02980 0.65 +0.8 632,950 + AZOBR_RS02980 0.74 -0.3 632,950 + AZOBR_RS02980 0.74 -0.6 632,950 + AZOBR_RS02980 0.74 -0.3 632,950 + AZOBR_RS02980 0.74 +0.4 632,950 + AZOBR_RS02980 0.74 +4.6 632,950 + AZOBR_RS02980 0.74 -0.5 632,950 + AZOBR_RS02980 0.74 -0.8 632,951 - AZOBR_RS02980 0.74 +0.6 633,020 - AZOBR_RS02980 0.79 +0.1 633,046 + AZOBR_RS02980 0.81 -2.1 633,047 - AZOBR_RS02980 0.81 -1.6 633,047 - AZOBR_RS02980 0.81 -2.4 633,121 + AZOBR_RS02980 0.87 +0.5 633,122 - AZOBR_RS02980 0.87 +1.9 633,366 + +0.9 633,367 - +0.4 633,370 - -0.7 633,468 + +0.7 633,469 - +0.2 633,611 + -1.2 633,612 - -0.1 633,618 - +4.0 633,675 - +0.5 633,960 - AZOBR_RS02985 0.15 -0.1 634,115 + AZOBR_RS02985 0.21 +1.2 634,115 + AZOBR_RS02985 0.21 -2.1
Or see this region's nucleotide sequence