Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01990 and AZOBR_RS01995 are separated by 48 nucleotides AZOBR_RS01995 and AZOBR_RS02000 are separated by 25 nucleotides AZOBR_RS02000 and AZOBR_RS02005 are separated by 466 nucleotides AZOBR_RS02005 and AZOBR_RS02010 are separated by 88 nucleotides
AZOBR_RS01990: AZOBR_RS01990 - phosphoglycerate mutase, at 408,723 to 409,307
_RS01990
AZOBR_RS01995: AZOBR_RS01995 - exodeoxyribonuclease III, at 409,356 to 410,150
_RS01995
AZOBR_RS02000: AZOBR_RS02000 - 5-carboxymethyl-2-hydroxymuconate isomerase, at 410,176 to 410,859
_RS02000
AZOBR_RS02005: AZOBR_RS02005 - transcriptional regulator, at 411,326 to 411,751
_RS02005
AZOBR_RS02010: AZOBR_RS02010 - glutamine amidotransferase, at 411,840 to 412,601
_RS02010
Position (kb) 410
411 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 409.525 kb on + strand, within AZOBR_RS01995 at 409.837 kb on + strand at 409.837 kb on + strand, within AZOBR_RS01995 at 409.837 kb on + strand, within AZOBR_RS01995 at 409.838 kb on - strand, within AZOBR_RS01995 at 409.838 kb on - strand, within AZOBR_RS01995 at 409.963 kb on + strand, within AZOBR_RS01995 at 409.963 kb on + strand, within AZOBR_RS01995 at 409.964 kb on - strand, within AZOBR_RS01995 at 409.964 kb on - strand, within AZOBR_RS01995 at 409.964 kb on - strand, within AZOBR_RS01995 at 409.996 kb on + strand, within AZOBR_RS01995 at 409.996 kb on + strand, within AZOBR_RS01995 at 409.996 kb on + strand, within AZOBR_RS01995 at 409.997 kb on - strand, within AZOBR_RS01995 at 410.166 kb on - strand at 410.166 kb on - strand at 410.273 kb on + strand, within AZOBR_RS02000 at 410.274 kb on - strand, within AZOBR_RS02000 at 410.274 kb on - strand, within AZOBR_RS02000 at 410.549 kb on + strand, within AZOBR_RS02000 at 410.555 kb on + strand, within AZOBR_RS02000 at 410.555 kb on + strand, within AZOBR_RS02000 at 410.556 kb on - strand, within AZOBR_RS02000 at 410.556 kb on - strand, within AZOBR_RS02000 at 410.556 kb on - strand, within AZOBR_RS02000 at 410.556 kb on - strand, within AZOBR_RS02000 at 410.657 kb on + strand, within AZOBR_RS02000 at 410.763 kb on - strand, within AZOBR_RS02000 at 410.780 kb on + strand, within AZOBR_RS02000 at 410.780 kb on + strand, within AZOBR_RS02000 at 410.780 kb on + strand, within AZOBR_RS02000 at 410.780 kb on + strand, within AZOBR_RS02000 at 410.781 kb on - strand, within AZOBR_RS02000 at 410.781 kb on - strand, within AZOBR_RS02000 at 410.852 kb on + strand at 411.100 kb on + strand at 411.100 kb on + strand at 411.101 kb on - strand at 411.216 kb on + strand at 411.216 kb on + strand at 411.227 kb on + strand at 411.228 kb on - strand at 411.228 kb on - strand at 411.228 kb on - strand at 411.232 kb on + strand at 411.232 kb on + strand at 411.232 kb on + strand at 411.233 kb on - strand at 411.233 kb on - strand at 411.359 kb on + strand at 411.599 kb on + strand, within AZOBR_RS02005 at 411.815 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 409,525 + AZOBR_RS01995 0.21 -1.2 409,837 + +0.8 409,837 + AZOBR_RS01995 0.61 -0.5 409,837 + AZOBR_RS01995 0.61 -1.4 409,838 - AZOBR_RS01995 0.61 -1.5 409,838 - AZOBR_RS01995 0.61 +0.2 409,963 + AZOBR_RS01995 0.76 -1.7 409,963 + AZOBR_RS01995 0.76 -1.8 409,964 - AZOBR_RS01995 0.76 +0.9 409,964 - AZOBR_RS01995 0.76 -2.3 409,964 - AZOBR_RS01995 0.76 +1.2 409,996 + AZOBR_RS01995 0.81 +0.4 409,996 + AZOBR_RS01995 0.81 +0.3 409,996 + AZOBR_RS01995 0.81 +1.8 409,997 - AZOBR_RS01995 0.81 -0.5 410,166 - -0.0 410,166 - +1.8 410,273 + AZOBR_RS02000 0.14 -0.8 410,274 - AZOBR_RS02000 0.14 -0.0 410,274 - AZOBR_RS02000 0.14 +0.6 410,549 + AZOBR_RS02000 0.55 -1.1 410,555 + AZOBR_RS02000 0.55 +2.8 410,555 + AZOBR_RS02000 0.55 -0.3 410,556 - AZOBR_RS02000 0.56 -2.4 410,556 - AZOBR_RS02000 0.56 +0.9 410,556 - AZOBR_RS02000 0.56 +1.1 410,556 - AZOBR_RS02000 0.56 +0.2 410,657 + AZOBR_RS02000 0.70 +2.4 410,763 - AZOBR_RS02000 0.86 -0.5 410,780 + AZOBR_RS02000 0.88 -1.5 410,780 + AZOBR_RS02000 0.88 +2.8 410,780 + AZOBR_RS02000 0.88 -2.5 410,780 + AZOBR_RS02000 0.88 -2.2 410,781 - AZOBR_RS02000 0.88 -1.3 410,781 - AZOBR_RS02000 0.88 -1.7 410,852 + +2.2 411,100 + -2.2 411,100 + +0.4 411,101 - +0.1 411,216 + -1.4 411,216 + +1.0 411,227 + -0.4 411,228 - +0.5 411,228 - +0.1 411,228 - -1.1 411,232 + +0.8 411,232 + +1.8 411,232 + +0.6 411,233 - -2.1 411,233 - -0.0 411,359 + -1.5 411,599 + AZOBR_RS02005 0.64 +1.8 411,815 + +0.7
Or see this region's nucleotide sequence