Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01810

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01805 and AZOBR_RS01810 are separated by 109 nucleotidesAZOBR_RS01810 and AZOBR_RS01815 overlap by 1 nucleotidesAZOBR_RS01815 and AZOBR_RS01820 are separated by 13 nucleotides AZOBR_RS01805: AZOBR_RS01805 - tRNA modification GTPase TrmE, at 366,180 to 367,511 _RS01805 AZOBR_RS01810: AZOBR_RS01810 - tRNA uridine 5-carboxymethylaminomethyl modification protein, at 367,621 to 369,489 _RS01810 AZOBR_RS01815: AZOBR_RS01815 - 16S rRNA methyltransferase, at 369,489 to 370,103 _RS01815 AZOBR_RS01820: AZOBR_RS01820 - chromosome partitioning protein ParA, at 370,117 to 370,947 _RS01820 Position (kb) 367 368 369 370Strain fitness (log2 ratio) -1 0 1 2 3 4at 366.646 kb on - strand, within AZOBR_RS01805at 367.609 kb on + strandat 367.610 kb on - strandat 368.437 kb on + strand, within AZOBR_RS01810at 368.644 kb on + strand, within AZOBR_RS01810at 369.203 kb on + strand, within AZOBR_RS01810at 369.617 kb on + strand, within AZOBR_RS01815at 369.617 kb on + strand, within AZOBR_RS01815at 370.101 kb on + strandat 370.352 kb on - strand, within AZOBR_RS01820

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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366,646 - AZOBR_RS01805 0.35 +4.4
367,609 + -0.3
367,610 - +1.2
368,437 + AZOBR_RS01810 0.44 -1.7
368,644 + AZOBR_RS01810 0.55 +0.8
369,203 + AZOBR_RS01810 0.85 -0.5
369,617 + AZOBR_RS01815 0.21 -0.7
369,617 + AZOBR_RS01815 0.21 +2.8
370,101 + +0.8
370,352 - AZOBR_RS01820 0.28 +1.8

Or see this region's nucleotide sequence