Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01580

Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01575 and AZOBR_RS01580 are separated by 19 nucleotidesAZOBR_RS01580 and AZOBR_RS01585 are separated by 71 nucleotides AZOBR_RS01575: AZOBR_RS01575 - 6-O-methylguanine DNA methyltransferase, at 323,345 to 324,169 _RS01575 AZOBR_RS01580: AZOBR_RS01580 - dihydrodipicolinate reductase, at 324,189 to 324,986 _RS01580 AZOBR_RS01585: AZOBR_RS01585 - zinc transporter, at 325,058 to 326,044 _RS01585 Position (kb) 324 325Strain fitness (log2 ratio) -2 -1 0 1 2 3at 323.609 kb on + strand, within AZOBR_RS01575at 323.610 kb on - strand, within AZOBR_RS01575at 323.610 kb on - strand, within AZOBR_RS01575at 323.610 kb on - strand, within AZOBR_RS01575at 324.086 kb on + strand, within AZOBR_RS01575at 324.086 kb on + strand, within AZOBR_RS01575at 324.167 kb on + strandat 325.339 kb on - strand, within AZOBR_RS01585at 325.353 kb on + strand, within AZOBR_RS01585at 325.359 kb on + strand, within AZOBR_RS01585at 325.360 kb on - strand, within AZOBR_RS01585at 325.470 kb on + strand, within AZOBR_RS01585at 325.618 kb on + strand, within AZOBR_RS01585at 325.618 kb on + strand, within AZOBR_RS01585at 325.619 kb on - strand, within AZOBR_RS01585at 325.619 kb on - strand, within AZOBR_RS01585at 325.619 kb on - strand, within AZOBR_RS01585at 325.845 kb on + strand, within AZOBR_RS01585at 325.845 kb on + strand, within AZOBR_RS01585at 325.845 kb on + strand, within AZOBR_RS01585at 325.845 kb on + strand, within AZOBR_RS01585at 325.845 kb on + strand, within AZOBR_RS01585at 325.846 kb on - strand, within AZOBR_RS01585at 325.846 kb on - strand, within AZOBR_RS01585

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Per-strain Table

Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI
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323,609 + AZOBR_RS01575 0.32 -1.5
323,610 - AZOBR_RS01575 0.32 -0.9
323,610 - AZOBR_RS01575 0.32 -0.6
323,610 - AZOBR_RS01575 0.32 +0.0
324,086 + AZOBR_RS01575 0.90 -0.9
324,086 + AZOBR_RS01575 0.90 -1.2
324,167 + +1.8
325,339 - AZOBR_RS01585 0.28 +0.2
325,353 + AZOBR_RS01585 0.30 +0.6
325,359 + AZOBR_RS01585 0.30 -1.5
325,360 - AZOBR_RS01585 0.31 -1.6
325,470 + AZOBR_RS01585 0.42 -1.2
325,618 + AZOBR_RS01585 0.57 -2.2
325,618 + AZOBR_RS01585 0.57 -0.6
325,619 - AZOBR_RS01585 0.57 -2.6
325,619 - AZOBR_RS01585 0.57 +0.2
325,619 - AZOBR_RS01585 0.57 -2.3
325,845 + AZOBR_RS01585 0.80 -1.6
325,845 + AZOBR_RS01585 0.80 -1.7
325,845 + AZOBR_RS01585 0.80 +2.8
325,845 + AZOBR_RS01585 0.80 -1.3
325,845 + AZOBR_RS01585 0.80 -0.5
325,846 - AZOBR_RS01585 0.80 +0.5
325,846 - AZOBR_RS01585 0.80 +0.4

Or see this region's nucleotide sequence