Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01050 and AZOBR_RS01055 are separated by 88 nucleotides AZOBR_RS01055 and AZOBR_RS01060 are separated by 356 nucleotides AZOBR_RS01060 and AZOBR_RS01065 are separated by 281 nucleotides
AZOBR_RS01050: AZOBR_RS01050 - hypothetical protein, at 212,590 to 215,127
_RS01050
AZOBR_RS01055: AZOBR_RS01055 - cold-shock protein, at 215,216 to 215,425
_RS01055
AZOBR_RS01060: AZOBR_RS01060 - ATPase AAA, at 215,782 to 217,218
_RS01060
AZOBR_RS01065: AZOBR_RS01065 - phosphopantothenate synthase, at 217,500 to 218,756
_RS01065
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -2
-1
0
1
2 at 215.195 kb on - strand at 215.609 kb on - strand at 215.823 kb on - strand at 215.823 kb on - strand at 215.823 kb on - strand at 216.152 kb on + strand, within AZOBR_RS01060 at 216.153 kb on - strand, within AZOBR_RS01060 at 216.153 kb on - strand, within AZOBR_RS01060 at 216.153 kb on - strand, within AZOBR_RS01060 at 216.311 kb on + strand, within AZOBR_RS01060 at 216.311 kb on + strand, within AZOBR_RS01060 at 216.311 kb on + strand, within AZOBR_RS01060 at 216.311 kb on + strand, within AZOBR_RS01060 at 216.312 kb on - strand, within AZOBR_RS01060 at 216.312 kb on - strand, within AZOBR_RS01060 at 216.312 kb on - strand, within AZOBR_RS01060 at 216.312 kb on - strand, within AZOBR_RS01060 at 216.753 kb on - strand, within AZOBR_RS01060 at 216.795 kb on - strand, within AZOBR_RS01060 at 216.917 kb on + strand, within AZOBR_RS01060 at 217.157 kb on + strand at 217.157 kb on + strand at 217.274 kb on + strand at 217.301 kb on + strand at 217.301 kb on + strand at 217.302 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 215,195 - -0.4 215,609 - -0.3 215,823 - -0.2 215,823 - +0.2 215,823 - -0.1 216,152 + AZOBR_RS01060 0.26 -2.0 216,153 - AZOBR_RS01060 0.26 +0.4 216,153 - AZOBR_RS01060 0.26 +0.3 216,153 - AZOBR_RS01060 0.26 -2.6 216,311 + AZOBR_RS01060 0.37 +2.0 216,311 + AZOBR_RS01060 0.37 -0.6 216,311 + AZOBR_RS01060 0.37 +0.9 216,311 + AZOBR_RS01060 0.37 -0.7 216,312 - AZOBR_RS01060 0.37 +0.5 216,312 - AZOBR_RS01060 0.37 +0.1 216,312 - AZOBR_RS01060 0.37 +1.2 216,312 - AZOBR_RS01060 0.37 +0.1 216,753 - AZOBR_RS01060 0.68 +1.1 216,795 - AZOBR_RS01060 0.70 -1.3 216,917 + AZOBR_RS01060 0.79 +0.3 217,157 + -0.1 217,157 + +0.7 217,274 + -1.7 217,301 + -1.5 217,301 + -0.3 217,302 - +0.1
Or see this region's nucleotide sequence