Experiment: Parafilmed volatile agar plate with Trichoderma atroviridae IMI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS00930 and AZOBR_RS00935 are separated by 273 nucleotides AZOBR_RS00935 and AZOBR_RS00940 are separated by 314 nucleotides
AZOBR_RS00930: AZOBR_RS00930 - RNA polymerase sigma 70, at 187,088 to 187,990
_RS00930
AZOBR_RS00935: AZOBR_RS00935 - hypothetical protein, at 188,264 to 189,079
_RS00935
AZOBR_RS00940: AZOBR_RS00940 - CarD family transcriptional regulator, at 189,394 to 189,894
_RS00940
Position (kb) 188
189
190 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 187.653 kb on + strand, within AZOBR_RS00930 at 187.653 kb on + strand, within AZOBR_RS00930 at 187.653 kb on + strand, within AZOBR_RS00930 at 187.654 kb on - strand, within AZOBR_RS00930 at 187.654 kb on - strand, within AZOBR_RS00930 at 187.654 kb on - strand, within AZOBR_RS00930 at 187.654 kb on - strand, within AZOBR_RS00930 at 187.689 kb on + strand, within AZOBR_RS00930 at 187.689 kb on + strand, within AZOBR_RS00930 at 187.789 kb on - strand, within AZOBR_RS00930 at 187.789 kb on - strand, within AZOBR_RS00930 at 187.983 kb on + strand at 187.984 kb on - strand at 187.990 kb on + strand at 187.990 kb on + strand at 187.990 kb on + strand at 187.990 kb on + strand at 187.990 kb on + strand at 187.990 kb on + strand at 187.990 kb on + strand at 187.991 kb on - strand at 187.991 kb on - strand at 187.991 kb on - strand at 188.167 kb on + strand at 188.167 kb on + strand at 188.168 kb on - strand at 188.236 kb on + strand at 188.236 kb on + strand at 188.236 kb on + strand at 188.245 kb on + strand at 188.823 kb on + strand, within AZOBR_RS00935 at 188.823 kb on + strand, within AZOBR_RS00935 at 188.823 kb on + strand, within AZOBR_RS00935 at 188.823 kb on + strand, within AZOBR_RS00935 at 188.937 kb on + strand, within AZOBR_RS00935 at 188.937 kb on + strand, within AZOBR_RS00935 at 189.144 kb on + strand at 189.145 kb on - strand at 189.145 kb on - strand at 189.312 kb on + strand at 189.312 kb on + strand at 189.389 kb on + strand at 189.390 kb on - strand at 189.518 kb on + strand, within AZOBR_RS00940 at 190.077 kb on - strand at 190.077 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Parafilmed volatile agar plate with Trichoderma atroviridae IMI remove 187,653 + AZOBR_RS00930 0.63 +0.0 187,653 + AZOBR_RS00930 0.63 +1.4 187,653 + AZOBR_RS00930 0.63 -0.6 187,654 - AZOBR_RS00930 0.63 -0.5 187,654 - AZOBR_RS00930 0.63 -0.5 187,654 - AZOBR_RS00930 0.63 +1.1 187,654 - AZOBR_RS00930 0.63 -0.7 187,689 + AZOBR_RS00930 0.67 -1.4 187,689 + AZOBR_RS00930 0.67 -2.9 187,789 - AZOBR_RS00930 0.78 -2.2 187,789 - AZOBR_RS00930 0.78 -0.3 187,983 + +0.2 187,984 - +0.0 187,990 + -0.6 187,990 + -0.9 187,990 + +1.3 187,990 + -0.7 187,990 + +1.3 187,990 + -0.8 187,990 + -0.7 187,991 - -0.2 187,991 - -0.8 187,991 - +0.1 188,167 + -0.9 188,167 + -1.7 188,168 - +0.7 188,236 + -2.8 188,236 + +0.4 188,236 + +0.8 188,245 + +0.4 188,823 + AZOBR_RS00935 0.69 -0.1 188,823 + AZOBR_RS00935 0.69 +2.7 188,823 + AZOBR_RS00935 0.69 +0.1 188,823 + AZOBR_RS00935 0.69 -0.8 188,937 + AZOBR_RS00935 0.82 -1.7 188,937 + AZOBR_RS00935 0.82 -1.0 189,144 + -1.4 189,145 - -1.9 189,145 - -0.2 189,312 + -0.7 189,312 + -0.1 189,389 + +2.7 189,390 - +0.2 189,518 + AZOBR_RS00940 0.25 -1.7 190,077 - -0.9 190,077 - -0.4
Or see this region's nucleotide sequence