Experiment: Hexanoic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21105 and ABZR87_RS21110 are separated by 226 nucleotides ABZR87_RS21110 and ABZR87_RS21115 are separated by 84 nucleotides ABZR87_RS21115 and ABZR87_RS21120 are separated by 158 nucleotides ABZR87_RS21120 and ABZR87_RS21125 are separated by 187 nucleotides
ABZR87_RS21105: ABZR87_RS21105 - porin, at 1,120,394 to 1,121,602
_RS21105
ABZR87_RS21110: ABZR87_RS21110 - GntR family transcriptional regulator, at 1,121,829 to 1,122,482
_RS21110
ABZR87_RS21115: ABZR87_RS21115 - NAD(P)-dependent alcohol dehydrogenase, at 1,122,567 to 1,123,574
_RS21115
ABZR87_RS21120: ABZR87_RS21120 - helix-turn-helix domain-containing protein, at 1,123,733 to 1,124,119
_RS21120
ABZR87_RS21125: ABZR87_RS21125 - YciI family protein, at 1,124,307 to 1,124,738
_RS21125
Position (kb) 1122
1123
1124 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1121.783 kb on + strand at 1121.783 kb on + strand at 1121.783 kb on + strand at 1121.783 kb on + strand at 1121.784 kb on - strand at 1121.784 kb on - strand at 1121.850 kb on + strand at 1121.851 kb on - strand at 1121.851 kb on - strand at 1121.891 kb on - strand at 1122.041 kb on + strand, within ABZR87_RS21110 at 1122.041 kb on + strand, within ABZR87_RS21110 at 1122.041 kb on + strand, within ABZR87_RS21110 at 1122.468 kb on + strand at 1122.469 kb on - strand at 1122.481 kb on - strand at 1122.517 kb on + strand at 1122.518 kb on - strand at 1122.518 kb on - strand at 1122.816 kb on - strand, within ABZR87_RS21115 at 1122.908 kb on - strand, within ABZR87_RS21115 at 1122.908 kb on - strand, within ABZR87_RS21115 at 1123.123 kb on - strand, within ABZR87_RS21115 at 1123.199 kb on + strand, within ABZR87_RS21115 at 1123.237 kb on + strand, within ABZR87_RS21115 at 1123.238 kb on - strand, within ABZR87_RS21115 at 1123.562 kb on + strand at 1123.563 kb on - strand at 1123.563 kb on - strand at 1123.589 kb on + strand at 1123.589 kb on + strand at 1123.590 kb on - strand at 1123.691 kb on + strand at 1123.949 kb on + strand, within ABZR87_RS21120 at 1123.950 kb on - strand, within ABZR87_RS21120 at 1123.976 kb on + strand, within ABZR87_RS21120 at 1123.976 kb on + strand, within ABZR87_RS21120 at 1123.976 kb on + strand, within ABZR87_RS21120 at 1123.977 kb on - strand, within ABZR87_RS21120 at 1123.977 kb on - strand, within ABZR87_RS21120 at 1123.977 kb on - strand, within ABZR87_RS21120 at 1124.153 kb on - strand at 1124.185 kb on + strand at 1124.185 kb on + strand at 1124.186 kb on - strand at 1124.186 kb on - strand at 1124.195 kb on + strand at 1124.195 kb on + strand at 1124.196 kb on - strand at 1124.211 kb on + strand at 1124.211 kb on + strand at 1124.212 kb on - strand at 1124.212 kb on - strand at 1124.251 kb on + strand at 1124.252 kb on - strand at 1124.394 kb on + strand, within ABZR87_RS21125 at 1124.394 kb on + strand, within ABZR87_RS21125 at 1124.394 kb on + strand, within ABZR87_RS21125 at 1124.394 kb on + strand, within ABZR87_RS21125 at 1124.394 kb on + strand, within ABZR87_RS21125 at 1124.394 kb on + strand, within ABZR87_RS21125 at 1124.541 kb on + strand, within ABZR87_RS21125
Per-strain Table
Position Strand Gene LocusTag Fraction Hexanoic (C) remove 1,121,783 + +0.2 1,121,783 + +0.3 1,121,783 + +0.6 1,121,783 + +0.5 1,121,784 - +1.6 1,121,784 - +0.2 1,121,850 + -0.2 1,121,851 - -1.4 1,121,851 - -2.4 1,121,891 - -0.4 1,122,041 + ABZR87_RS21110 0.32 -1.0 1,122,041 + ABZR87_RS21110 0.32 -1.1 1,122,041 + ABZR87_RS21110 0.32 +1.6 1,122,468 + +0.4 1,122,469 - -0.9 1,122,481 - -1.9 1,122,517 + -0.0 1,122,518 - +0.5 1,122,518 - -1.9 1,122,816 - ABZR87_RS21115 0.25 +0.4 1,122,908 - ABZR87_RS21115 0.34 +0.4 1,122,908 - ABZR87_RS21115 0.34 +0.4 1,123,123 - ABZR87_RS21115 0.55 +1.9 1,123,199 + ABZR87_RS21115 0.63 +0.2 1,123,237 + ABZR87_RS21115 0.66 +0.6 1,123,238 - ABZR87_RS21115 0.67 +0.1 1,123,562 + -0.4 1,123,563 - +0.6 1,123,563 - +0.4 1,123,589 + -0.3 1,123,589 + +0.2 1,123,590 - -0.6 1,123,691 + +0.3 1,123,949 + ABZR87_RS21120 0.56 -0.5 1,123,950 - ABZR87_RS21120 0.56 -0.4 1,123,976 + ABZR87_RS21120 0.63 -0.4 1,123,976 + ABZR87_RS21120 0.63 +0.1 1,123,976 + ABZR87_RS21120 0.63 -0.3 1,123,977 - ABZR87_RS21120 0.63 -1.2 1,123,977 - ABZR87_RS21120 0.63 -0.5 1,123,977 - ABZR87_RS21120 0.63 +0.9 1,124,153 - -0.1 1,124,185 + +0.7 1,124,185 + +0.7 1,124,186 - -0.6 1,124,186 - +0.1 1,124,195 + +1.0 1,124,195 + -0.1 1,124,196 - +0.4 1,124,211 + +0.6 1,124,211 + +0.2 1,124,212 - +0.7 1,124,212 - +0.2 1,124,251 + -0.9 1,124,252 - +1.0 1,124,394 + ABZR87_RS21125 0.20 -1.1 1,124,394 + ABZR87_RS21125 0.20 +0.7 1,124,394 + ABZR87_RS21125 0.20 +1.6 1,124,394 + ABZR87_RS21125 0.20 -0.6 1,124,394 + ABZR87_RS21125 0.20 +0.6 1,124,394 + ABZR87_RS21125 0.20 +0.7 1,124,541 + ABZR87_RS21125 0.54 +1.8
Or see this region's nucleotide sequence