Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14975

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14965 and ABZR87_RS14970 are separated by 11 nucleotidesABZR87_RS14970 and ABZR87_RS14975 are separated by 96 nucleotidesABZR87_RS14975 and ABZR87_RS14980 are separated by 30 nucleotides ABZR87_RS14965: ABZR87_RS14965 - DUF3619 family protein, at 3,157,342 to 3,157,782 _RS14965 ABZR87_RS14970: ABZR87_RS14970 - DUF3106 domain-containing protein, at 3,157,794 to 3,158,639 _RS14970 ABZR87_RS14975: ABZR87_RS14975 - RDD family protein, at 3,158,736 to 3,159,260 _RS14975 ABZR87_RS14980: ABZR87_RS14980 - alpha/beta fold hydrolase, at 3,159,291 to 3,160,307 _RS14980 Position (kb) 3158 3159 3160Strain fitness (log2 ratio) -2 -1 0 1 2at 3157.762 kb on + strandat 3157.763 kb on - strandat 3157.942 kb on + strand, within ABZR87_RS14970at 3157.942 kb on + strand, within ABZR87_RS14970at 3157.942 kb on + strand, within ABZR87_RS14970at 3158.142 kb on + strand, within ABZR87_RS14970at 3158.142 kb on + strand, within ABZR87_RS14970at 3158.286 kb on + strand, within ABZR87_RS14970at 3158.286 kb on + strand, within ABZR87_RS14970at 3158.287 kb on - strand, within ABZR87_RS14970at 3158.426 kb on + strand, within ABZR87_RS14970at 3158.426 kb on + strand, within ABZR87_RS14970at 3158.661 kb on - strandat 3158.826 kb on + strand, within ABZR87_RS14975at 3158.826 kb on + strand, within ABZR87_RS14975at 3158.827 kb on - strand, within ABZR87_RS14975at 3158.827 kb on - strand, within ABZR87_RS14975at 3158.827 kb on - strand, within ABZR87_RS14975at 3158.935 kb on + strand, within ABZR87_RS14975at 3158.935 kb on + strand, within ABZR87_RS14975at 3158.936 kb on - strand, within ABZR87_RS14975at 3158.936 kb on - strand, within ABZR87_RS14975at 3158.961 kb on + strand, within ABZR87_RS14975at 3158.961 kb on + strand, within ABZR87_RS14975at 3158.962 kb on - strand, within ABZR87_RS14975at 3158.962 kb on - strand, within ABZR87_RS14975at 3158.962 kb on - strand, within ABZR87_RS14975at 3158.962 kb on - strand, within ABZR87_RS14975at 3159.047 kb on + strand, within ABZR87_RS14975at 3159.076 kb on - strand, within ABZR87_RS14975at 3159.115 kb on + strand, within ABZR87_RS14975at 3159.116 kb on - strand, within ABZR87_RS14975at 3159.116 kb on - strand, within ABZR87_RS14975at 3159.735 kb on + strand, within ABZR87_RS14980at 3159.735 kb on + strand, within ABZR87_RS14980at 3159.736 kb on - strand, within ABZR87_RS14980at 3159.843 kb on + strand, within ABZR87_RS14980at 3159.880 kb on + strand, within ABZR87_RS14980at 3159.881 kb on - strand, within ABZR87_RS14980at 3160.228 kb on + strandat 3160.229 kb on - strandat 3160.229 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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3,157,762 + +1.0
3,157,763 - -0.4
3,157,942 + ABZR87_RS14970 0.17 -0.0
3,157,942 + ABZR87_RS14970 0.17 -1.6
3,157,942 + ABZR87_RS14970 0.17 -2.1
3,158,142 + ABZR87_RS14970 0.41 -0.6
3,158,142 + ABZR87_RS14970 0.41 -0.8
3,158,286 + ABZR87_RS14970 0.58 -2.7
3,158,286 + ABZR87_RS14970 0.58 -1.2
3,158,287 - ABZR87_RS14970 0.58 +0.8
3,158,426 + ABZR87_RS14970 0.75 +0.7
3,158,426 + ABZR87_RS14970 0.75 -0.5
3,158,661 - +0.1
3,158,826 + ABZR87_RS14975 0.17 -0.2
3,158,826 + ABZR87_RS14975 0.17 +1.6
3,158,827 - ABZR87_RS14975 0.17 -0.2
3,158,827 - ABZR87_RS14975 0.17 +0.9
3,158,827 - ABZR87_RS14975 0.17 +2.0
3,158,935 + ABZR87_RS14975 0.38 -1.1
3,158,935 + ABZR87_RS14975 0.38 +0.4
3,158,936 - ABZR87_RS14975 0.38 +0.1
3,158,936 - ABZR87_RS14975 0.38 +0.4
3,158,961 + ABZR87_RS14975 0.43 -0.1
3,158,961 + ABZR87_RS14975 0.43 -0.7
3,158,962 - ABZR87_RS14975 0.43 -0.2
3,158,962 - ABZR87_RS14975 0.43 -2.3
3,158,962 - ABZR87_RS14975 0.43 +0.4
3,158,962 - ABZR87_RS14975 0.43 +0.2
3,159,047 + ABZR87_RS14975 0.59 +0.4
3,159,076 - ABZR87_RS14975 0.65 +0.3
3,159,115 + ABZR87_RS14975 0.72 -1.0
3,159,116 - ABZR87_RS14975 0.72 -1.8
3,159,116 - ABZR87_RS14975 0.72 -0.6
3,159,735 + ABZR87_RS14980 0.44 +0.4
3,159,735 + ABZR87_RS14980 0.44 +0.7
3,159,736 - ABZR87_RS14980 0.44 -0.2
3,159,843 + ABZR87_RS14980 0.54 -0.2
3,159,880 + ABZR87_RS14980 0.58 +1.5
3,159,881 - ABZR87_RS14980 0.58 +1.2
3,160,228 + +0.2
3,160,229 - -0.2
3,160,229 - +0.4

Or see this region's nucleotide sequence