Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11620

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11615 and ABZR87_RS11620 are separated by 218 nucleotidesABZR87_RS11620 and ABZR87_RS11625 are separated by 73 nucleotides ABZR87_RS11615: ABZR87_RS11615 - LysR family transcriptional regulator, at 2,461,656 to 2,462,585 _RS11615 ABZR87_RS11620: ABZR87_RS11620 - haloacid dehalogenase type II, at 2,462,804 to 2,463,502 _RS11620 ABZR87_RS11625: ABZR87_RS11625 - malate synthase A, at 2,463,576 to 2,465,156 _RS11625 Position (kb) 2462 2463 2464Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2462.074 kb on + strand, within ABZR87_RS11615at 2462.074 kb on + strand, within ABZR87_RS11615at 2462.075 kb on - strand, within ABZR87_RS11615at 2462.075 kb on - strand, within ABZR87_RS11615at 2462.530 kb on - strandat 2462.530 kb on - strandat 2462.594 kb on + strandat 2462.594 kb on + strandat 2462.594 kb on + strandat 2462.594 kb on + strandat 2462.594 kb on + strandat 2462.594 kb on + strandat 2462.595 kb on - strandat 2462.595 kb on - strandat 2462.595 kb on - strandat 2462.595 kb on - strandat 2462.632 kb on + strandat 2462.632 kb on + strandat 2462.632 kb on + strandat 2462.633 kb on - strandat 2462.642 kb on - strandat 2462.669 kb on + strandat 2462.717 kb on + strandat 2462.717 kb on + strandat 2462.718 kb on - strandat 2462.718 kb on - strandat 2462.718 kb on - strandat 2462.718 kb on - strandat 2462.718 kb on - strandat 2462.837 kb on + strandat 2462.837 kb on + strandat 2462.837 kb on + strandat 2462.837 kb on + strandat 2462.837 kb on + strandat 2462.837 kb on + strandat 2462.838 kb on - strandat 2462.838 kb on - strandat 2462.838 kb on - strandat 2462.838 kb on - strandat 2462.858 kb on + strandat 2462.858 kb on + strandat 2462.943 kb on - strand, within ABZR87_RS11620at 2462.943 kb on - strand, within ABZR87_RS11620at 2462.984 kb on + strand, within ABZR87_RS11620at 2462.984 kb on + strand, within ABZR87_RS11620at 2462.984 kb on + strand, within ABZR87_RS11620at 2462.984 kb on + strand, within ABZR87_RS11620at 2462.984 kb on + strand, within ABZR87_RS11620at 2462.985 kb on - strand, within ABZR87_RS11620at 2462.985 kb on - strand, within ABZR87_RS11620at 2462.985 kb on - strand, within ABZR87_RS11620at 2462.985 kb on - strand, within ABZR87_RS11620at 2462.985 kb on - strand, within ABZR87_RS11620at 2463.023 kb on + strand, within ABZR87_RS11620at 2463.046 kb on - strand, within ABZR87_RS11620at 2463.086 kb on + strand, within ABZR87_RS11620at 2463.086 kb on + strand, within ABZR87_RS11620at 2463.087 kb on - strand, within ABZR87_RS11620at 2463.087 kb on - strand, within ABZR87_RS11620at 2463.087 kb on - strand, within ABZR87_RS11620at 2463.263 kb on + strand, within ABZR87_RS11620at 2463.263 kb on + strand, within ABZR87_RS11620at 2463.284 kb on + strand, within ABZR87_RS11620at 2463.284 kb on + strand, within ABZR87_RS11620at 2463.284 kb on + strand, within ABZR87_RS11620at 2463.374 kb on + strand, within ABZR87_RS11620at 2463.374 kb on + strand, within ABZR87_RS11620at 2463.500 kb on + strandat 2463.501 kb on - strandat 2463.501 kb on - strandat 2463.501 kb on - strandat 2463.501 kb on - strandat 2463.514 kb on + strandat 2463.514 kb on + strandat 2463.514 kb on + strandat 2463.529 kb on + strandat 2463.529 kb on + strandat 2463.530 kb on - strandat 2463.630 kb on + strandat 2463.631 kb on - strandat 2463.909 kb on + strand, within ABZR87_RS11625at 2463.909 kb on + strand, within ABZR87_RS11625at 2463.909 kb on + strand, within ABZR87_RS11625at 2463.909 kb on + strand, within ABZR87_RS11625at 2463.910 kb on - strand, within ABZR87_RS11625at 2463.910 kb on - strand, within ABZR87_RS11625at 2463.910 kb on - strand, within ABZR87_RS11625at 2463.910 kb on - strand, within ABZR87_RS11625at 2463.910 kb on - strand, within ABZR87_RS11625at 2464.026 kb on + strand, within ABZR87_RS11625at 2464.026 kb on + strand, within ABZR87_RS11625at 2464.027 kb on - strand, within ABZR87_RS11625at 2464.027 kb on - strand, within ABZR87_RS11625at 2464.200 kb on + strand, within ABZR87_RS11625at 2464.201 kb on - strand, within ABZR87_RS11625at 2464.302 kb on - strand, within ABZR87_RS11625at 2464.401 kb on + strand, within ABZR87_RS11625at 2464.401 kb on + strand, within ABZR87_RS11625at 2464.401 kb on + strand, within ABZR87_RS11625at 2464.402 kb on - strand, within ABZR87_RS11625at 2464.402 kb on - strand, within ABZR87_RS11625at 2464.402 kb on - strand, within ABZR87_RS11625at 2464.402 kb on - strand, within ABZR87_RS11625at 2464.402 kb on - strand, within ABZR87_RS11625at 2464.488 kb on - strand, within ABZR87_RS11625at 2464.497 kb on + strand, within ABZR87_RS11625at 2464.497 kb on + strand, within ABZR87_RS11625

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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2,462,074 + ABZR87_RS11615 0.45 +0.7
2,462,074 + ABZR87_RS11615 0.45 -0.7
2,462,075 - ABZR87_RS11615 0.45 -1.9
2,462,075 - ABZR87_RS11615 0.45 -3.1
2,462,530 - -3.9
2,462,530 - -2.7
2,462,594 + +0.7
2,462,594 + -0.9
2,462,594 + +0.1
2,462,594 + +0.8
2,462,594 + -0.5
2,462,594 + -0.7
2,462,595 - +2.4
2,462,595 - -0.9
2,462,595 - -0.4
2,462,595 - +0.3
2,462,632 + +0.6
2,462,632 + +0.3
2,462,632 + -0.0
2,462,633 - -0.4
2,462,642 - -0.0
2,462,669 + +0.4
2,462,717 + +0.4
2,462,717 + +0.7
2,462,718 - -0.7
2,462,718 - +1.3
2,462,718 - -0.2
2,462,718 - -0.1
2,462,718 - +0.0
2,462,837 + -0.3
2,462,837 + -0.2
2,462,837 + -0.9
2,462,837 + +0.2
2,462,837 + -0.5
2,462,837 + +1.0
2,462,838 - -4.1
2,462,838 - -3.9
2,462,838 - -3.3
2,462,838 - -3.4
2,462,858 + +1.1
2,462,858 + -0.4
2,462,943 - ABZR87_RS11620 0.20 -2.2
2,462,943 - ABZR87_RS11620 0.20 -3.2
2,462,984 + ABZR87_RS11620 0.26 -1.1
2,462,984 + ABZR87_RS11620 0.26 -0.4
2,462,984 + ABZR87_RS11620 0.26 -0.6
2,462,984 + ABZR87_RS11620 0.26 -0.2
2,462,984 + ABZR87_RS11620 0.26 -0.4
2,462,985 - ABZR87_RS11620 0.26 -2.4
2,462,985 - ABZR87_RS11620 0.26 +0.8
2,462,985 - ABZR87_RS11620 0.26 -3.9
2,462,985 - ABZR87_RS11620 0.26 -3.6
2,462,985 - ABZR87_RS11620 0.26 -2.4
2,463,023 + ABZR87_RS11620 0.31 -1.8
2,463,046 - ABZR87_RS11620 0.35 -2.9
2,463,086 + ABZR87_RS11620 0.40 +0.7
2,463,086 + ABZR87_RS11620 0.40 -0.2
2,463,087 - ABZR87_RS11620 0.40 -3.9
2,463,087 - ABZR87_RS11620 0.40 -2.1
2,463,087 - ABZR87_RS11620 0.40 -1.9
2,463,263 + ABZR87_RS11620 0.66 -0.3
2,463,263 + ABZR87_RS11620 0.66 -1.3
2,463,284 + ABZR87_RS11620 0.69 +0.5
2,463,284 + ABZR87_RS11620 0.69 -0.2
2,463,284 + ABZR87_RS11620 0.69 -0.7
2,463,374 + ABZR87_RS11620 0.82 -0.2
2,463,374 + ABZR87_RS11620 0.82 -2.0
2,463,500 + +1.7
2,463,501 - -3.2
2,463,501 - -1.8
2,463,501 - -2.0
2,463,501 - -3.4
2,463,514 + +1.3
2,463,514 + +0.3
2,463,514 + +0.4
2,463,529 + +0.3
2,463,529 + +0.3
2,463,530 - -3.3
2,463,630 + -3.9
2,463,631 - -4.5
2,463,909 + ABZR87_RS11625 0.21 -4.3
2,463,909 + ABZR87_RS11625 0.21 -2.2
2,463,909 + ABZR87_RS11625 0.21 -3.9
2,463,909 + ABZR87_RS11625 0.21 -4.4
2,463,910 - ABZR87_RS11625 0.21 -3.7
2,463,910 - ABZR87_RS11625 0.21 -3.0
2,463,910 - ABZR87_RS11625 0.21 -2.8
2,463,910 - ABZR87_RS11625 0.21 -1.5
2,463,910 - ABZR87_RS11625 0.21 -3.2
2,464,026 + ABZR87_RS11625 0.28 -4.8
2,464,026 + ABZR87_RS11625 0.28 -2.5
2,464,027 - ABZR87_RS11625 0.29 -2.2
2,464,027 - ABZR87_RS11625 0.29 -4.0
2,464,200 + ABZR87_RS11625 0.39 -5.1
2,464,201 - ABZR87_RS11625 0.40 -2.8
2,464,302 - ABZR87_RS11625 0.46 -3.4
2,464,401 + ABZR87_RS11625 0.52 -3.6
2,464,401 + ABZR87_RS11625 0.52 -2.2
2,464,401 + ABZR87_RS11625 0.52 -2.6
2,464,402 - ABZR87_RS11625 0.52 -3.9
2,464,402 - ABZR87_RS11625 0.52 -1.7
2,464,402 - ABZR87_RS11625 0.52 -2.7
2,464,402 - ABZR87_RS11625 0.52 -5.5
2,464,402 - ABZR87_RS11625 0.52 -2.9
2,464,488 - ABZR87_RS11625 0.58 -3.1
2,464,497 + ABZR87_RS11625 0.58 -3.8
2,464,497 + ABZR87_RS11625 0.58 -3.0

Or see this region's nucleotide sequence