Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07770

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07765 and ABZR87_RS07770 are separated by 372 nucleotidesABZR87_RS07770 and ABZR87_RS07775 are separated by 12 nucleotides ABZR87_RS07765: ABZR87_RS07765 - hypothetical protein, at 1,646,694 to 1,648,220 _RS07765 ABZR87_RS07770: ABZR87_RS07770 - rRNA maturation RNase YbeY, at 1,648,593 to 1,649,405 _RS07770 ABZR87_RS07775: ABZR87_RS07775 - PhoH family protein, at 1,649,418 to 1,650,410 _RS07775 Position (kb) 1648 1649 1650Strain fitness (log2 ratio) -2 -1 0 1 2at 1647.614 kb on + strand, within ABZR87_RS07765at 1647.614 kb on + strand, within ABZR87_RS07765at 1647.615 kb on - strand, within ABZR87_RS07765at 1647.615 kb on - strand, within ABZR87_RS07765at 1648.102 kb on + strandat 1648.102 kb on + strandat 1648.102 kb on + strandat 1648.317 kb on - strandat 1648.317 kb on - strandat 1648.317 kb on - strandat 1648.330 kb on - strandat 1648.595 kb on - strandat 1649.320 kb on - strand, within ABZR87_RS07770at 1649.419 kb on + strandat 1649.420 kb on - strandat 1649.420 kb on - strandat 1649.429 kb on + strandat 1649.430 kb on - strandat 1649.430 kb on - strandat 1649.430 kb on - strandat 1649.452 kb on + strandat 1649.453 kb on - strandat 1649.643 kb on - strand, within ABZR87_RS07775at 1649.728 kb on + strand, within ABZR87_RS07775at 1649.729 kb on - strand, within ABZR87_RS07775at 1649.801 kb on - strand, within ABZR87_RS07775at 1649.801 kb on - strand, within ABZR87_RS07775at 1649.827 kb on + strand, within ABZR87_RS07775at 1649.827 kb on + strand, within ABZR87_RS07775at 1649.828 kb on - strand, within ABZR87_RS07775at 1649.962 kb on + strand, within ABZR87_RS07775at 1649.963 kb on - strand, within ABZR87_RS07775at 1649.963 kb on - strand, within ABZR87_RS07775at 1649.963 kb on - strand, within ABZR87_RS07775at 1650.028 kb on + strand, within ABZR87_RS07775at 1650.074 kb on + strand, within ABZR87_RS07775at 1650.075 kb on - strand, within ABZR87_RS07775at 1650.075 kb on - strand, within ABZR87_RS07775at 1650.133 kb on + strand, within ABZR87_RS07775at 1650.134 kb on - strand, within ABZR87_RS07775at 1650.217 kb on + strand, within ABZR87_RS07775at 1650.217 kb on + strand, within ABZR87_RS07775at 1650.217 kb on + strand, within ABZR87_RS07775at 1650.218 kb on - strand, within ABZR87_RS07775

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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1,647,614 + ABZR87_RS07765 0.60 -0.3
1,647,614 + ABZR87_RS07765 0.60 +0.1
1,647,615 - ABZR87_RS07765 0.60 -0.8
1,647,615 - ABZR87_RS07765 0.60 -0.4
1,648,102 + -0.0
1,648,102 + +1.1
1,648,102 + +0.3
1,648,317 - +0.9
1,648,317 - -1.6
1,648,317 - +0.1
1,648,330 - -0.9
1,648,595 - -0.6
1,649,320 - ABZR87_RS07770 0.89 -0.5
1,649,419 + +0.5
1,649,420 - +0.6
1,649,420 - -0.1
1,649,429 + -0.9
1,649,430 - +0.2
1,649,430 - +1.9
1,649,430 - -0.7
1,649,452 + -0.2
1,649,453 - +0.3
1,649,643 - ABZR87_RS07775 0.23 -1.0
1,649,728 + ABZR87_RS07775 0.31 +1.6
1,649,729 - ABZR87_RS07775 0.31 -0.2
1,649,801 - ABZR87_RS07775 0.39 -0.1
1,649,801 - ABZR87_RS07775 0.39 +0.0
1,649,827 + ABZR87_RS07775 0.41 +1.1
1,649,827 + ABZR87_RS07775 0.41 +1.0
1,649,828 - ABZR87_RS07775 0.41 -0.3
1,649,962 + ABZR87_RS07775 0.55 -0.7
1,649,963 - ABZR87_RS07775 0.55 +0.2
1,649,963 - ABZR87_RS07775 0.55 +0.8
1,649,963 - ABZR87_RS07775 0.55 -0.5
1,650,028 + ABZR87_RS07775 0.61 -0.9
1,650,074 + ABZR87_RS07775 0.66 -0.9
1,650,075 - ABZR87_RS07775 0.66 -0.1
1,650,075 - ABZR87_RS07775 0.66 -1.6
1,650,133 + ABZR87_RS07775 0.72 -0.6
1,650,134 - ABZR87_RS07775 0.72 -0.1
1,650,217 + ABZR87_RS07775 0.80 -0.5
1,650,217 + ABZR87_RS07775 0.80 -0.7
1,650,217 + ABZR87_RS07775 0.80 -2.0
1,650,218 - ABZR87_RS07775 0.81 +0.8

Or see this region's nucleotide sequence