Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06770

Experiment: Hexanoic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06760 and ABZR87_RS06765 are separated by 172 nucleotidesABZR87_RS06765 and ABZR87_RS06770 are separated by 108 nucleotidesABZR87_RS06770 and ABZR87_RS06775 are separated by 29 nucleotidesABZR87_RS06775 and ABZR87_RS06780 are separated by 111 nucleotides ABZR87_RS06760: ABZR87_RS06760 - glutaredoxin 3, at 1,435,946 to 1,436,203 _RS06760 ABZR87_RS06765: ABZR87_RS06765 - protein-export chaperone SecB, at 1,436,376 to 1,436,894 _RS06765 ABZR87_RS06770: ABZR87_RS06770 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase, at 1,437,003 to 1,438,019 _RS06770 ABZR87_RS06775: ABZR87_RS06775 - tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL, at 1,438,049 to 1,438,519 _RS06775 ABZR87_RS06780: ABZR87_RS06780 - ComF family protein, at 1,438,631 to 1,439,353 _RS06780 Position (kb) 1437 1438 1439Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1436.117 kb on + strand, within ABZR87_RS06760at 1436.117 kb on + strand, within ABZR87_RS06760at 1436.117 kb on + strand, within ABZR87_RS06760at 1436.117 kb on + strand, within ABZR87_RS06760at 1436.117 kb on + strand, within ABZR87_RS06760at 1436.117 kb on + strand, within ABZR87_RS06760at 1436.118 kb on - strand, within ABZR87_RS06760at 1436.119 kb on + strand, within ABZR87_RS06760at 1436.120 kb on - strand, within ABZR87_RS06760at 1436.120 kb on - strand, within ABZR87_RS06760at 1436.266 kb on + strandat 1436.266 kb on + strandat 1436.308 kb on + strandat 1436.308 kb on + strandat 1436.308 kb on + strandat 1436.308 kb on + strandat 1436.309 kb on - strandat 1436.309 kb on - strandat 1436.309 kb on - strandat 1436.309 kb on - strandat 1436.309 kb on - strandat 1436.309 kb on - strandat 1436.309 kb on - strandat 1436.309 kb on - strandat 1436.309 kb on - strandat 1436.313 kb on + strandat 1436.313 kb on + strandat 1436.313 kb on + strandat 1436.313 kb on + strandat 1436.313 kb on + strandat 1436.892 kb on + strandat 1436.892 kb on + strandat 1436.892 kb on + strandat 1436.893 kb on - strandat 1436.893 kb on - strandat 1436.893 kb on - strandat 1436.893 kb on - strandat 1436.893 kb on - strandat 1436.893 kb on - strandat 1436.893 kb on - strandat 1436.897 kb on - strandat 1436.897 kb on - strandat 1436.897 kb on - strandat 1436.897 kb on - strandat 1436.897 kb on - strandat 1436.897 kb on - strandat 1437.141 kb on + strand, within ABZR87_RS06770at 1437.141 kb on + strand, within ABZR87_RS06770at 1437.142 kb on - strand, within ABZR87_RS06770at 1437.316 kb on + strand, within ABZR87_RS06770at 1437.316 kb on + strand, within ABZR87_RS06770at 1437.317 kb on - strand, within ABZR87_RS06770at 1437.317 kb on - strand, within ABZR87_RS06770at 1437.482 kb on + strand, within ABZR87_RS06770at 1437.482 kb on + strand, within ABZR87_RS06770at 1437.540 kb on + strand, within ABZR87_RS06770at 1437.540 kb on + strand, within ABZR87_RS06770at 1437.540 kb on + strand, within ABZR87_RS06770at 1437.541 kb on - strand, within ABZR87_RS06770at 1437.911 kb on + strand, within ABZR87_RS06770at 1437.912 kb on - strand, within ABZR87_RS06770at 1437.912 kb on - strand, within ABZR87_RS06770at 1437.920 kb on + strandat 1437.920 kb on + strandat 1437.920 kb on + strandat 1437.921 kb on - strandat 1437.921 kb on - strandat 1437.921 kb on - strandat 1437.921 kb on - strandat 1437.921 kb on - strandat 1437.926 kb on + strandat 1437.927 kb on - strandat 1438.018 kb on - strandat 1438.115 kb on + strand, within ABZR87_RS06775at 1438.115 kb on + strand, within ABZR87_RS06775at 1438.115 kb on + strand, within ABZR87_RS06775at 1438.115 kb on + strand, within ABZR87_RS06775at 1438.115 kb on + strand, within ABZR87_RS06775at 1438.115 kb on + strand, within ABZR87_RS06775at 1438.116 kb on - strand, within ABZR87_RS06775at 1438.116 kb on - strand, within ABZR87_RS06775at 1438.360 kb on - strand, within ABZR87_RS06775at 1438.368 kb on + strand, within ABZR87_RS06775at 1438.554 kb on + strandat 1438.554 kb on + strandat 1438.554 kb on + strandat 1438.554 kb on + strandat 1438.555 kb on - strandat 1438.555 kb on - strandat 1438.843 kb on + strand, within ABZR87_RS06780at 1438.844 kb on - strand, within ABZR87_RS06780at 1438.844 kb on - strand, within ABZR87_RS06780at 1438.930 kb on - strand, within ABZR87_RS06780at 1438.930 kb on - strand, within ABZR87_RS06780at 1438.930 kb on - strand, within ABZR87_RS06780

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Per-strain Table

Position Strand Gene LocusTag Fraction Hexanoic (C)
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1,436,117 + ABZR87_RS06760 0.66 -0.4
1,436,117 + ABZR87_RS06760 0.66 -0.4
1,436,117 + ABZR87_RS06760 0.66 +0.4
1,436,117 + ABZR87_RS06760 0.66 +0.2
1,436,117 + ABZR87_RS06760 0.66 +0.4
1,436,117 + ABZR87_RS06760 0.66 +0.5
1,436,118 - ABZR87_RS06760 0.67 -0.4
1,436,119 + ABZR87_RS06760 0.67 -0.3
1,436,120 - ABZR87_RS06760 0.67 +0.4
1,436,120 - ABZR87_RS06760 0.67 +0.5
1,436,266 + +0.4
1,436,266 + -0.1
1,436,308 + +0.3
1,436,308 + +0.1
1,436,308 + +1.3
1,436,308 + +0.5
1,436,309 - -0.8
1,436,309 - +0.1
1,436,309 - +0.1
1,436,309 - -0.0
1,436,309 - -0.2
1,436,309 - +0.6
1,436,309 - -1.2
1,436,309 - -0.0
1,436,309 - -0.3
1,436,313 + -0.3
1,436,313 + +0.9
1,436,313 + -0.1
1,436,313 + -0.5
1,436,313 + +0.1
1,436,892 + +1.3
1,436,892 + +0.2
1,436,892 + +0.0
1,436,893 - -0.3
1,436,893 - -1.1
1,436,893 - -1.3
1,436,893 - -1.0
1,436,893 - -0.5
1,436,893 - -2.0
1,436,893 - -1.3
1,436,897 - -0.2
1,436,897 - -1.4
1,436,897 - -1.1
1,436,897 - -0.6
1,436,897 - -2.1
1,436,897 - -1.2
1,437,141 + ABZR87_RS06770 0.14 -2.7
1,437,141 + ABZR87_RS06770 0.14 -3.2
1,437,142 - ABZR87_RS06770 0.14 -1.9
1,437,316 + ABZR87_RS06770 0.31 -1.5
1,437,316 + ABZR87_RS06770 0.31 -3.6
1,437,317 - ABZR87_RS06770 0.31 -2.4
1,437,317 - ABZR87_RS06770 0.31 -3.4
1,437,482 + ABZR87_RS06770 0.47 -3.9
1,437,482 + ABZR87_RS06770 0.47 -0.3
1,437,540 + ABZR87_RS06770 0.53 -4.4
1,437,540 + ABZR87_RS06770 0.53 -2.1
1,437,540 + ABZR87_RS06770 0.53 -5.7
1,437,541 - ABZR87_RS06770 0.53 -1.6
1,437,911 + ABZR87_RS06770 0.89 -2.5
1,437,912 - ABZR87_RS06770 0.89 -2.7
1,437,912 - ABZR87_RS06770 0.89 -3.3
1,437,920 + -4.8
1,437,920 + -2.3
1,437,920 + -3.6
1,437,921 - -0.7
1,437,921 - -3.3
1,437,921 - -2.1
1,437,921 - -1.3
1,437,921 - -3.5
1,437,926 + -2.8
1,437,927 - -3.9
1,438,018 - +0.4
1,438,115 + ABZR87_RS06775 0.14 +0.9
1,438,115 + ABZR87_RS06775 0.14 -0.1
1,438,115 + ABZR87_RS06775 0.14 -0.4
1,438,115 + ABZR87_RS06775 0.14 +0.5
1,438,115 + ABZR87_RS06775 0.14 -0.3
1,438,115 + ABZR87_RS06775 0.14 -0.1
1,438,116 - ABZR87_RS06775 0.14 -0.1
1,438,116 - ABZR87_RS06775 0.14 -0.8
1,438,360 - ABZR87_RS06775 0.66 +0.3
1,438,368 + ABZR87_RS06775 0.68 -0.5
1,438,554 + +0.8
1,438,554 + -0.1
1,438,554 + -1.1
1,438,554 + -0.3
1,438,555 - -0.3
1,438,555 - +0.5
1,438,843 + ABZR87_RS06780 0.29 +0.2
1,438,844 - ABZR87_RS06780 0.29 -1.3
1,438,844 - ABZR87_RS06780 0.29 +0.4
1,438,930 - ABZR87_RS06780 0.41 +0.6
1,438,930 - ABZR87_RS06780 0.41 +1.1
1,438,930 - ABZR87_RS06780 0.41 -0.5

Or see this region's nucleotide sequence