Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004051

Experiment: R2A with N-decanoyl-DL-Homoserine lactone 10 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004050 and ABIE53_004051 are separated by 70 nucleotidesABIE53_004051 and ABIE53_004052 are separated by 6 nucleotidesABIE53_004052 and ABIE53_004053 are separated by 3 nucleotides ABIE53_004050: ABIE53_004050 - choline dehydrogenase-like flavoprotein, at 208,029 to 209,672 _004050 ABIE53_004051: ABIE53_004051 - glutathione S-transferase, at 209,743 to 210,327 _004051 ABIE53_004052: ABIE53_004052 - hypothetical protein, at 210,334 to 210,984 _004052 ABIE53_004053: ABIE53_004053 - 6-phosphogluconolactonase, at 210,988 to 212,085 _004053 Position (kb) 209 210 211Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 208.841 kb on + strand, within ABIE53_004050at 208.854 kb on + strand, within ABIE53_004050at 208.854 kb on + strand, within ABIE53_004050at 208.855 kb on - strand, within ABIE53_004050at 208.855 kb on - strand, within ABIE53_004050at 209.032 kb on - strand, within ABIE53_004050at 209.032 kb on - strand, within ABIE53_004050at 209.032 kb on - strand, within ABIE53_004050at 209.053 kb on + strand, within ABIE53_004050at 209.053 kb on + strand, within ABIE53_004050at 209.054 kb on - strand, within ABIE53_004050at 209.054 kb on - strand, within ABIE53_004050at 209.054 kb on - strand, within ABIE53_004050at 209.061 kb on + strand, within ABIE53_004050at 209.062 kb on - strand, within ABIE53_004050at 209.062 kb on - strand, within ABIE53_004050at 209.103 kb on + strand, within ABIE53_004050at 209.103 kb on + strand, within ABIE53_004050at 209.142 kb on + strand, within ABIE53_004050at 209.142 kb on + strand, within ABIE53_004050at 209.142 kb on + strand, within ABIE53_004050at 209.142 kb on + strand, within ABIE53_004050at 209.142 kb on + strand, within ABIE53_004050at 209.142 kb on + strand, within ABIE53_004050at 209.142 kb on + strand, within ABIE53_004050at 209.143 kb on - strand, within ABIE53_004050at 209.143 kb on - strand, within ABIE53_004050at 209.143 kb on - strand, within ABIE53_004050at 209.143 kb on - strand, within ABIE53_004050at 209.143 kb on - strand, within ABIE53_004050at 209.144 kb on + strand, within ABIE53_004050at 209.145 kb on - strand, within ABIE53_004050at 209.235 kb on + strand, within ABIE53_004050at 209.235 kb on + strand, within ABIE53_004050at 209.236 kb on - strand, within ABIE53_004050at 209.236 kb on - strand, within ABIE53_004050at 209.236 kb on - strand, within ABIE53_004050at 209.261 kb on - strand, within ABIE53_004050at 209.323 kb on - strand, within ABIE53_004050at 209.456 kb on + strand, within ABIE53_004050at 209.456 kb on + strand, within ABIE53_004050at 209.457 kb on - strand, within ABIE53_004050at 209.457 kb on - strand, within ABIE53_004050at 209.668 kb on + strandat 209.669 kb on - strandat 209.755 kb on + strandat 209.755 kb on + strandat 209.893 kb on + strand, within ABIE53_004051at 209.893 kb on + strand, within ABIE53_004051at 209.893 kb on + strand, within ABIE53_004051at 209.893 kb on + strand, within ABIE53_004051at 209.894 kb on - strand, within ABIE53_004051at 209.897 kb on + strand, within ABIE53_004051at 209.898 kb on - strand, within ABIE53_004051at 209.898 kb on - strand, within ABIE53_004051at 210.006 kb on + strand, within ABIE53_004051at 210.007 kb on - strand, within ABIE53_004051at 210.151 kb on - strand, within ABIE53_004051at 210.160 kb on + strand, within ABIE53_004051at 210.215 kb on + strand, within ABIE53_004051at 210.230 kb on + strand, within ABIE53_004051at 210.407 kb on - strand, within ABIE53_004052at 210.407 kb on - strand, within ABIE53_004052at 210.584 kb on + strand, within ABIE53_004052at 210.584 kb on + strand, within ABIE53_004052at 210.584 kb on + strand, within ABIE53_004052at 210.585 kb on - strand, within ABIE53_004052at 210.640 kb on + strand, within ABIE53_004052at 210.640 kb on + strand, within ABIE53_004052at 210.640 kb on + strand, within ABIE53_004052at 210.687 kb on + strand, within ABIE53_004052at 210.687 kb on + strand, within ABIE53_004052at 210.687 kb on + strand, within ABIE53_004052at 210.688 kb on - strand, within ABIE53_004052at 210.688 kb on - strand, within ABIE53_004052at 210.829 kb on + strand, within ABIE53_004052at 210.830 kb on - strand, within ABIE53_004052at 210.830 kb on - strand, within ABIE53_004052at 210.831 kb on + strand, within ABIE53_004052at 210.870 kb on - strand, within ABIE53_004052at 210.877 kb on + strand, within ABIE53_004052at 210.878 kb on - strand, within ABIE53_004052at 211.136 kb on + strand, within ABIE53_004053at 211.137 kb on - strand, within ABIE53_004053at 211.187 kb on + strand, within ABIE53_004053at 211.233 kb on - strand, within ABIE53_004053at 211.233 kb on - strand, within ABIE53_004053at 211.233 kb on - strand, within ABIE53_004053at 211.269 kb on - strand, within ABIE53_004053

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with N-decanoyl-DL-Homoserine lactone 10 uM
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208,841 + ABIE53_004050 0.49 -0.7
208,854 + ABIE53_004050 0.50 +0.1
208,854 + ABIE53_004050 0.50 +0.4
208,855 - ABIE53_004050 0.50 -0.4
208,855 - ABIE53_004050 0.50 +0.7
209,032 - ABIE53_004050 0.61 -0.3
209,032 - ABIE53_004050 0.61 +2.5
209,032 - ABIE53_004050 0.61 -1.1
209,053 + ABIE53_004050 0.62 +0.0
209,053 + ABIE53_004050 0.62 +0.1
209,054 - ABIE53_004050 0.62 -2.1
209,054 - ABIE53_004050 0.62 +1.2
209,054 - ABIE53_004050 0.62 +1.7
209,061 + ABIE53_004050 0.63 -1.0
209,062 - ABIE53_004050 0.63 -1.7
209,062 - ABIE53_004050 0.63 +0.7
209,103 + ABIE53_004050 0.65 -0.4
209,103 + ABIE53_004050 0.65 -1.1
209,142 + ABIE53_004050 0.68 -1.3
209,142 + ABIE53_004050 0.68 +0.3
209,142 + ABIE53_004050 0.68 -0.8
209,142 + ABIE53_004050 0.68 +2.3
209,142 + ABIE53_004050 0.68 -3.2
209,142 + ABIE53_004050 0.68 +0.2
209,142 + ABIE53_004050 0.68 -1.3
209,143 - ABIE53_004050 0.68 -2.1
209,143 - ABIE53_004050 0.68 -1.3
209,143 - ABIE53_004050 0.68 -0.7
209,143 - ABIE53_004050 0.68 -2.1
209,143 - ABIE53_004050 0.68 +0.3
209,144 + ABIE53_004050 0.68 +0.1
209,145 - ABIE53_004050 0.68 +0.3
209,235 + ABIE53_004050 0.73 -1.8
209,235 + ABIE53_004050 0.73 -1.6
209,236 - ABIE53_004050 0.73 +1.0
209,236 - ABIE53_004050 0.73 +0.0
209,236 - ABIE53_004050 0.73 +0.7
209,261 - ABIE53_004050 0.75 -1.6
209,323 - ABIE53_004050 0.79 -0.5
209,456 + ABIE53_004050 0.87 +0.8
209,456 + ABIE53_004050 0.87 -2.0
209,457 - ABIE53_004050 0.87 -0.6
209,457 - ABIE53_004050 0.87 -2.4
209,668 + -0.7
209,669 - -0.2
209,755 + -0.8
209,755 + -0.8
209,893 + ABIE53_004051 0.26 -1.8
209,893 + ABIE53_004051 0.26 -2.2
209,893 + ABIE53_004051 0.26 +0.8
209,893 + ABIE53_004051 0.26 -1.2
209,894 - ABIE53_004051 0.26 +0.8
209,897 + ABIE53_004051 0.26 -0.1
209,898 - ABIE53_004051 0.26 -0.7
209,898 - ABIE53_004051 0.26 -2.4
210,006 + ABIE53_004051 0.45 -2.5
210,007 - ABIE53_004051 0.45 -0.6
210,151 - ABIE53_004051 0.70 +0.8
210,160 + ABIE53_004051 0.71 -1.2
210,215 + ABIE53_004051 0.81 -1.6
210,230 + ABIE53_004051 0.83 -1.2
210,407 - ABIE53_004052 0.11 +0.8
210,407 - ABIE53_004052 0.11 +0.4
210,584 + ABIE53_004052 0.38 +0.8
210,584 + ABIE53_004052 0.38 -2.0
210,584 + ABIE53_004052 0.38 +1.1
210,585 - ABIE53_004052 0.39 -1.8
210,640 + ABIE53_004052 0.47 -1.2
210,640 + ABIE53_004052 0.47 -0.9
210,640 + ABIE53_004052 0.47 -1.2
210,687 + ABIE53_004052 0.54 +1.2
210,687 + ABIE53_004052 0.54 +0.6
210,687 + ABIE53_004052 0.54 +0.8
210,688 - ABIE53_004052 0.54 -1.6
210,688 - ABIE53_004052 0.54 -1.2
210,829 + ABIE53_004052 0.76 -1.8
210,830 - ABIE53_004052 0.76 -0.2
210,830 - ABIE53_004052 0.76 -0.5
210,831 + ABIE53_004052 0.76 -0.8
210,870 - ABIE53_004052 0.82 -0.2
210,877 + ABIE53_004052 0.83 -0.8
210,878 - ABIE53_004052 0.84 -2.1
211,136 + ABIE53_004053 0.13 -3.3
211,137 - ABIE53_004053 0.14 +0.6
211,187 + ABIE53_004053 0.18 -0.2
211,233 - ABIE53_004053 0.22 -2.6
211,233 - ABIE53_004053 0.22 -0.1
211,233 - ABIE53_004053 0.22 +0.2
211,269 - ABIE53_004053 0.26 -0.5

Or see this region's nucleotide sequence