Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2732

Experiment: MoLS4 with L-Leucine as nutrient 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntsvQ and DVU2731 are separated by 9 nucleotidesDVU2731 and DVU2732 are separated by 300 nucleotidesDVU2732 and DVU2733 overlap by 28 nucleotides DVU2730: svQ - tail fiber protein, putative (TIGR), at 2,831,674 to 2,832,564 svQ DVU2731: DVU2731 - tail fiber assembly protein, putative (TIGR), at 2,832,574 to 2,833,113 DVU2731 DVU2732: DVU2732 - conserved hypothetical protein (TIGR), at 2,833,414 to 2,833,614 DVU2732 DVU2733: DVU2733 - adenine specific DNA methyltransferase, putative (TIGR), at 2,833,587 to 2,834,336 DVU2733 Position (kb) 2833 2834Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2832.433 kb on + strand, within svQat 2832.453 kb on + strand, within svQat 2832.461 kb on - strand, within svQat 2832.570 kb on + strandat 2832.615 kb on + strandat 2832.615 kb on + strandat 2832.655 kb on + strand, within DVU2731at 2832.684 kb on + strand, within DVU2731at 2832.686 kb on + strand, within DVU2731at 2832.686 kb on + strand, within DVU2731at 2832.694 kb on - strand, within DVU2731at 2832.711 kb on - strand, within DVU2731at 2832.789 kb on + strand, within DVU2731at 2832.789 kb on + strand, within DVU2731at 2832.789 kb on + strand, within DVU2731at 2832.789 kb on + strand, within DVU2731at 2832.789 kb on + strand, within DVU2731at 2832.842 kb on + strand, within DVU2731at 2832.864 kb on + strand, within DVU2731at 2832.991 kb on - strand, within DVU2731at 2833.042 kb on - strand, within DVU2731at 2833.121 kb on - strandat 2833.285 kb on + strandat 2833.306 kb on + strandat 2833.314 kb on - strandat 2833.346 kb on + strandat 2833.351 kb on + strandat 2833.351 kb on + strandat 2833.351 kb on + strandat 2833.356 kb on + strandat 2833.364 kb on - strandat 2833.364 kb on - strandat 2833.364 kb on - strandat 2833.364 kb on - strandat 2833.491 kb on - strand, within DVU2732at 2833.492 kb on - strand, within DVU2732at 2833.492 kb on - strand, within DVU2732at 2833.492 kb on - strand, within DVU2732at 2833.519 kb on + strand, within DVU2732at 2833.527 kb on - strand, within DVU2732at 2833.578 kb on + strand, within DVU2732at 2833.586 kb on - strand, within DVU2732at 2833.619 kb on + strandat 2833.633 kb on + strandat 2833.635 kb on - strandat 2833.649 kb on + strandat 2833.680 kb on - strand, within DVU2733at 2833.692 kb on - strand, within DVU2733at 2833.748 kb on - strand, within DVU2733at 2833.755 kb on - strand, within DVU2733at 2833.765 kb on - strand, within DVU2733at 2833.967 kb on + strand, within DVU2733at 2833.975 kb on - strand, within DVU2733at 2833.998 kb on - strand, within DVU2733at 2833.998 kb on - strand, within DVU2733at 2834.019 kb on - strand, within DVU2733at 2834.063 kb on + strand, within DVU2733at 2834.141 kb on + strand, within DVU2733at 2834.149 kb on - strand, within DVU2733at 2834.149 kb on - strand, within DVU2733at 2834.239 kb on - strand, within DVU2733at 2834.289 kb on + strandat 2834.289 kb on + strandat 2834.302 kb on + strandat 2834.333 kb on - strandat 2834.456 kb on - strandat 2834.501 kb on + strandat 2834.501 kb on + strandat 2834.501 kb on + strandat 2834.509 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Leucine as nutrient 10mM
remove
2,832,433 + svQ DVU2730 0.85 +0.9
2,832,453 + svQ DVU2730 0.87 -0.1
2,832,461 - svQ DVU2730 0.88 +0.1
2,832,570 + -0.2
2,832,615 + -1.1
2,832,615 + +0.3
2,832,655 + DVU2731 0.15 -0.1
2,832,684 + DVU2731 0.20 +0.1
2,832,686 + DVU2731 0.21 -0.8
2,832,686 + DVU2731 0.21 -0.6
2,832,694 - DVU2731 0.22 +0.8
2,832,711 - DVU2731 0.25 -2.6
2,832,789 + DVU2731 0.40 +0.1
2,832,789 + DVU2731 0.40 -1.3
2,832,789 + DVU2731 0.40 -0.1
2,832,789 + DVU2731 0.40 -0.7
2,832,789 + DVU2731 0.40 -1.0
2,832,842 + DVU2731 0.50 -0.3
2,832,864 + DVU2731 0.54 +1.3
2,832,991 - DVU2731 0.77 +0.4
2,833,042 - DVU2731 0.87 -0.1
2,833,121 - -0.0
2,833,285 + +0.1
2,833,306 + -0.3
2,833,314 - +0.0
2,833,346 + -0.2
2,833,351 + -0.4
2,833,351 + +0.0
2,833,351 + +1.7
2,833,356 + +3.3
2,833,364 - -1.2
2,833,364 - -0.4
2,833,364 - +0.0
2,833,364 - +0.8
2,833,491 - DVU2732 0.38 -1.4
2,833,492 - DVU2732 0.39 -0.7
2,833,492 - DVU2732 0.39 -1.6
2,833,492 - DVU2732 0.39 -0.9
2,833,519 + DVU2732 0.52 -0.2
2,833,527 - DVU2732 0.56 +0.3
2,833,578 + DVU2732 0.82 -2.4
2,833,586 - DVU2732 0.86 -1.1
2,833,619 + -0.6
2,833,633 + -0.2
2,833,635 - -0.8
2,833,649 + -0.5
2,833,680 - DVU2733 0.12 -0.9
2,833,692 - DVU2733 0.14 -1.3
2,833,748 - DVU2733 0.21 -0.2
2,833,755 - DVU2733 0.22 -0.6
2,833,765 - DVU2733 0.24 +0.0
2,833,967 + DVU2733 0.51 +0.2
2,833,975 - DVU2733 0.52 -0.8
2,833,998 - DVU2733 0.55 +0.0
2,833,998 - DVU2733 0.55 -0.8
2,834,019 - DVU2733 0.58 +0.1
2,834,063 + DVU2733 0.63 +2.3
2,834,141 + DVU2733 0.74 +3.3
2,834,149 - DVU2733 0.75 -1.0
2,834,149 - DVU2733 0.75 +1.1
2,834,239 - DVU2733 0.87 +1.0
2,834,289 + -1.7
2,834,289 + -1.6
2,834,302 + +0.7
2,834,333 - -0.4
2,834,456 - +0.2
2,834,501 + -1.3
2,834,501 + +0.0
2,834,501 + -1.0
2,834,509 - +0.2

Or see this region's nucleotide sequence