Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2683

Experiment: MoLS4 with L-Leucine as nutrient 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2682 and DORF43224 are separated by 466 nucleotidesDORF43224 and DVU2683 are separated by 144 nucleotidesDVU2683 and DVU2684 are separated by 148 nucleotides DVU2682: DVU2682 - DedA family protein (TIGR), at 2,795,218 to 2,795,859 DVU2682 DORF43224: DORF43224 - no description, at 2,796,326 to 2,796,499 DORF43224 DVU2683: DVU2683 - L-lactate permease family protein (TIGR), at 2,796,644 to 2,798,194 DVU2683 DVU2684: DVU2684 - hypothetical protein (TIGR), at 2,798,343 to 2,799,023 DVU2684 Position (kb) 2796 2797 2798 2799Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2795.768 kb on + strand, within DVU2682at 2795.911 kb on - strandat 2795.922 kb on + strandat 2795.990 kb on + strandat 2796.030 kb on + strandat 2796.188 kb on + strandat 2796.196 kb on - strandat 2796.260 kb on - strandat 2796.312 kb on + strandat 2796.316 kb on + strandat 2796.335 kb on + strandat 2796.419 kb on - strand, within DORF43224at 2796.421 kb on + strand, within DORF43224at 2796.519 kb on - strandat 2796.536 kb on + strandat 2796.544 kb on - strandat 2796.544 kb on - strandat 2796.643 kb on + strandat 2796.643 kb on + strandat 2796.651 kb on - strandat 2796.661 kb on - strandat 2796.691 kb on - strandat 2796.758 kb on - strandat 2796.781 kb on + strandat 2796.788 kb on + strandat 2796.850 kb on + strand, within DVU2683at 2796.850 kb on + strand, within DVU2683at 2796.858 kb on - strand, within DVU2683at 2796.858 kb on - strand, within DVU2683at 2796.897 kb on - strand, within DVU2683at 2796.936 kb on + strand, within DVU2683at 2796.962 kb on + strand, within DVU2683at 2797.000 kb on + strand, within DVU2683at 2797.102 kb on + strand, within DVU2683at 2797.107 kb on + strand, within DVU2683at 2797.107 kb on + strand, within DVU2683at 2797.107 kb on + strand, within DVU2683at 2797.115 kb on - strand, within DVU2683at 2797.115 kb on - strand, within DVU2683at 2797.115 kb on - strand, within DVU2683at 2797.115 kb on - strand, within DVU2683at 2797.115 kb on - strand, within DVU2683at 2797.135 kb on + strand, within DVU2683at 2797.139 kb on - strand, within DVU2683at 2797.192 kb on + strand, within DVU2683at 2797.200 kb on - strand, within DVU2683at 2797.200 kb on - strand, within DVU2683at 2797.223 kb on - strand, within DVU2683at 2797.223 kb on - strand, within DVU2683at 2797.225 kb on + strand, within DVU2683at 2797.330 kb on + strand, within DVU2683at 2797.338 kb on - strand, within DVU2683at 2797.442 kb on + strand, within DVU2683at 2797.714 kb on - strand, within DVU2683at 2797.719 kb on - strand, within DVU2683at 2797.836 kb on - strand, within DVU2683at 2797.910 kb on - strand, within DVU2683at 2797.960 kb on + strand, within DVU2683at 2797.972 kb on + strand, within DVU2683at 2797.979 kb on + strand, within DVU2683at 2798.101 kb on - strandat 2798.157 kb on - strandat 2798.163 kb on + strandat 2798.257 kb on - strandat 2798.354 kb on - strandat 2798.359 kb on - strandat 2798.677 kb on + strand, within DVU2684at 2798.688 kb on - strand, within DVU2684at 2798.820 kb on + strand, within DVU2684at 2798.850 kb on - strand, within DVU2684at 2798.868 kb on + strand, within DVU2684at 2798.868 kb on + strand, within DVU2684at 2798.944 kb on + strand, within DVU2684at 2799.015 kb on - strandat 2799.020 kb on - strandat 2799.031 kb on + strandat 2799.039 kb on - strandat 2799.057 kb on - strandat 2799.129 kb on - strandat 2799.155 kb on + strandat 2799.174 kb on + strandat 2799.177 kb on - strandat 2799.182 kb on - strandat 2799.182 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Leucine as nutrient 10mM
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2,795,768 + DVU2682 0.86 +0.3
2,795,911 - -0.3
2,795,922 + -0.1
2,795,990 + +0.1
2,796,030 + +0.5
2,796,188 + -0.7
2,796,196 - +0.2
2,796,260 - -0.2
2,796,312 + +1.7
2,796,316 + -1.8
2,796,335 + -0.4
2,796,419 - DORF43224 0.53 -0.8
2,796,421 + DORF43224 0.55 -1.2
2,796,519 - -0.9
2,796,536 + -1.5
2,796,544 - -0.4
2,796,544 - -1.3
2,796,643 + +0.8
2,796,643 + -0.1
2,796,651 - -0.9
2,796,661 - +0.0
2,796,691 - +0.0
2,796,758 - -1.3
2,796,781 + -0.5
2,796,788 + -1.4
2,796,850 + DVU2683 0.13 -0.2
2,796,850 + DVU2683 0.13 -1.5
2,796,858 - DVU2683 0.14 +1.0
2,796,858 - DVU2683 0.14 +1.3
2,796,897 - DVU2683 0.16 -1.8
2,796,936 + DVU2683 0.19 -0.2
2,796,962 + DVU2683 0.21 -1.0
2,797,000 + DVU2683 0.23 -1.9
2,797,102 + DVU2683 0.30 +0.1
2,797,107 + DVU2683 0.30 -2.4
2,797,107 + DVU2683 0.30 -0.3
2,797,107 + DVU2683 0.30 +1.3
2,797,115 - DVU2683 0.30 -0.5
2,797,115 - DVU2683 0.30 -0.6
2,797,115 - DVU2683 0.30 -0.8
2,797,115 - DVU2683 0.30 -1.8
2,797,115 - DVU2683 0.30 -1.3
2,797,135 + DVU2683 0.32 +0.7
2,797,139 - DVU2683 0.32 -0.3
2,797,192 + DVU2683 0.35 -0.3
2,797,200 - DVU2683 0.36 -1.1
2,797,200 - DVU2683 0.36 -0.0
2,797,223 - DVU2683 0.37 -0.5
2,797,223 - DVU2683 0.37 -0.0
2,797,225 + DVU2683 0.37 -1.0
2,797,330 + DVU2683 0.44 -1.5
2,797,338 - DVU2683 0.45 +0.4
2,797,442 + DVU2683 0.51 -0.7
2,797,714 - DVU2683 0.69 -0.1
2,797,719 - DVU2683 0.69 -1.4
2,797,836 - DVU2683 0.77 -2.1
2,797,910 - DVU2683 0.82 +1.9
2,797,960 + DVU2683 0.85 +0.1
2,797,972 + DVU2683 0.86 -1.5
2,797,979 + DVU2683 0.86 -0.7
2,798,101 - +1.5
2,798,157 - +1.0
2,798,163 + -2.0
2,798,257 - +1.4
2,798,354 - -0.2
2,798,359 - -0.1
2,798,677 + DVU2684 0.49 -1.4
2,798,688 - DVU2684 0.51 -1.5
2,798,820 + DVU2684 0.70 -3.8
2,798,850 - DVU2684 0.74 -1.8
2,798,868 + DVU2684 0.77 +0.2
2,798,868 + DVU2684 0.77 -0.4
2,798,944 + DVU2684 0.88 -1.2
2,799,015 - +0.1
2,799,020 - -0.1
2,799,031 + +0.1
2,799,039 - +1.3
2,799,057 - -1.3
2,799,129 - -0.7
2,799,155 + -2.3
2,799,174 + +0.0
2,799,177 - -1.3
2,799,182 - -1.1
2,799,182 - +0.5

Or see this region's nucleotide sequence