Experiment: MoLS4 with L-Leucine as nutrient 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2682 and DORF43224 are separated by 466 nucleotides DORF43224 and DVU2683 are separated by 144 nucleotides DVU2683 and DVU2684 are separated by 148 nucleotides
DVU2682: DVU2682 - DedA family protein (TIGR), at 2,795,218 to 2,795,859
DVU2682
DORF43224: DORF43224 - no description, at 2,796,326 to 2,796,499
DORF43224
DVU2683: DVU2683 - L-lactate permease family protein (TIGR), at 2,796,644 to 2,798,194
DVU2683
DVU2684: DVU2684 - hypothetical protein (TIGR), at 2,798,343 to 2,799,023
DVU2684
Position (kb)
2796
2797
2798
2799 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2795.768 kb on + strand, within DVU2682 at 2795.911 kb on - strand at 2795.922 kb on + strand at 2795.990 kb on + strand at 2796.030 kb on + strand at 2796.188 kb on + strand at 2796.196 kb on - strand at 2796.260 kb on - strand at 2796.312 kb on + strand at 2796.316 kb on + strand at 2796.335 kb on + strand at 2796.419 kb on - strand, within DORF43224 at 2796.421 kb on + strand, within DORF43224 at 2796.519 kb on - strand at 2796.536 kb on + strand at 2796.544 kb on - strand at 2796.544 kb on - strand at 2796.643 kb on + strand at 2796.643 kb on + strand at 2796.651 kb on - strand at 2796.661 kb on - strand at 2796.691 kb on - strand at 2796.758 kb on - strand at 2796.781 kb on + strand at 2796.788 kb on + strand at 2796.850 kb on + strand, within DVU2683 at 2796.850 kb on + strand, within DVU2683 at 2796.858 kb on - strand, within DVU2683 at 2796.858 kb on - strand, within DVU2683 at 2796.897 kb on - strand, within DVU2683 at 2796.936 kb on + strand, within DVU2683 at 2796.962 kb on + strand, within DVU2683 at 2797.000 kb on + strand, within DVU2683 at 2797.102 kb on + strand, within DVU2683 at 2797.107 kb on + strand, within DVU2683 at 2797.107 kb on + strand, within DVU2683 at 2797.107 kb on + strand, within DVU2683 at 2797.115 kb on - strand, within DVU2683 at 2797.115 kb on - strand, within DVU2683 at 2797.115 kb on - strand, within DVU2683 at 2797.115 kb on - strand, within DVU2683 at 2797.115 kb on - strand, within DVU2683 at 2797.135 kb on + strand, within DVU2683 at 2797.139 kb on - strand, within DVU2683 at 2797.192 kb on + strand, within DVU2683 at 2797.200 kb on - strand, within DVU2683 at 2797.200 kb on - strand, within DVU2683 at 2797.223 kb on - strand, within DVU2683 at 2797.223 kb on - strand, within DVU2683 at 2797.225 kb on + strand, within DVU2683 at 2797.330 kb on + strand, within DVU2683 at 2797.338 kb on - strand, within DVU2683 at 2797.442 kb on + strand, within DVU2683 at 2797.714 kb on - strand, within DVU2683 at 2797.719 kb on - strand, within DVU2683 at 2797.836 kb on - strand, within DVU2683 at 2797.910 kb on - strand, within DVU2683 at 2797.960 kb on + strand, within DVU2683 at 2797.972 kb on + strand, within DVU2683 at 2797.979 kb on + strand, within DVU2683 at 2798.101 kb on - strand at 2798.157 kb on - strand at 2798.163 kb on + strand at 2798.257 kb on - strand at 2798.354 kb on - strand at 2798.359 kb on - strand at 2798.677 kb on + strand, within DVU2684 at 2798.688 kb on - strand, within DVU2684 at 2798.820 kb on + strand, within DVU2684 at 2798.850 kb on - strand, within DVU2684 at 2798.868 kb on + strand, within DVU2684 at 2798.868 kb on + strand, within DVU2684 at 2798.944 kb on + strand, within DVU2684 at 2799.015 kb on - strand at 2799.020 kb on - strand at 2799.031 kb on + strand at 2799.039 kb on - strand at 2799.057 kb on - strand at 2799.129 kb on - strand at 2799.155 kb on + strand at 2799.174 kb on + strand at 2799.177 kb on - strand at 2799.182 kb on - strand at 2799.182 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with L-Leucine as nutrient 10mM remove 2,795,768 + DVU2682 0.86 +0.3 2,795,911 - -0.3 2,795,922 + -0.1 2,795,990 + +0.1 2,796,030 + +0.5 2,796,188 + -0.7 2,796,196 - +0.2 2,796,260 - -0.2 2,796,312 + +1.7 2,796,316 + -1.8 2,796,335 + -0.4 2,796,419 - DORF43224 0.53 -0.8 2,796,421 + DORF43224 0.55 -1.2 2,796,519 - -0.9 2,796,536 + -1.5 2,796,544 - -0.4 2,796,544 - -1.3 2,796,643 + +0.8 2,796,643 + -0.1 2,796,651 - -0.9 2,796,661 - +0.0 2,796,691 - +0.0 2,796,758 - -1.3 2,796,781 + -0.5 2,796,788 + -1.4 2,796,850 + DVU2683 0.13 -0.2 2,796,850 + DVU2683 0.13 -1.5 2,796,858 - DVU2683 0.14 +1.0 2,796,858 - DVU2683 0.14 +1.3 2,796,897 - DVU2683 0.16 -1.8 2,796,936 + DVU2683 0.19 -0.2 2,796,962 + DVU2683 0.21 -1.0 2,797,000 + DVU2683 0.23 -1.9 2,797,102 + DVU2683 0.30 +0.1 2,797,107 + DVU2683 0.30 -2.4 2,797,107 + DVU2683 0.30 -0.3 2,797,107 + DVU2683 0.30 +1.3 2,797,115 - DVU2683 0.30 -0.5 2,797,115 - DVU2683 0.30 -0.6 2,797,115 - DVU2683 0.30 -0.8 2,797,115 - DVU2683 0.30 -1.8 2,797,115 - DVU2683 0.30 -1.3 2,797,135 + DVU2683 0.32 +0.7 2,797,139 - DVU2683 0.32 -0.3 2,797,192 + DVU2683 0.35 -0.3 2,797,200 - DVU2683 0.36 -1.1 2,797,200 - DVU2683 0.36 -0.0 2,797,223 - DVU2683 0.37 -0.5 2,797,223 - DVU2683 0.37 -0.0 2,797,225 + DVU2683 0.37 -1.0 2,797,330 + DVU2683 0.44 -1.5 2,797,338 - DVU2683 0.45 +0.4 2,797,442 + DVU2683 0.51 -0.7 2,797,714 - DVU2683 0.69 -0.1 2,797,719 - DVU2683 0.69 -1.4 2,797,836 - DVU2683 0.77 -2.1 2,797,910 - DVU2683 0.82 +1.9 2,797,960 + DVU2683 0.85 +0.1 2,797,972 + DVU2683 0.86 -1.5 2,797,979 + DVU2683 0.86 -0.7 2,798,101 - +1.5 2,798,157 - +1.0 2,798,163 + -2.0 2,798,257 - +1.4 2,798,354 - -0.2 2,798,359 - -0.1 2,798,677 + DVU2684 0.49 -1.4 2,798,688 - DVU2684 0.51 -1.5 2,798,820 + DVU2684 0.70 -3.8 2,798,850 - DVU2684 0.74 -1.8 2,798,868 + DVU2684 0.77 +0.2 2,798,868 + DVU2684 0.77 -0.4 2,798,944 + DVU2684 0.88 -1.2 2,799,015 - +0.1 2,799,020 - -0.1 2,799,031 + +0.1 2,799,039 - +1.3 2,799,057 - -1.3 2,799,129 - -0.7 2,799,155 + -2.3 2,799,174 + +0.0 2,799,177 - -1.3 2,799,182 - -1.1 2,799,182 - +0.5
Or see this region's nucleotide sequence