Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DORF14879

Experiment: MoLS4 with L-Leucine as nutrient 10mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrsbV and DVU1996 are separated by 598 nucleotidesDVU1996 and DORF14879 are separated by 1 nucleotidesDORF14879 and DVU1999 are separated by 500 nucleotides DVU1995: rsbV - anti-anti-sigma factor (TIGR), at 2,076,256 to 2,076,585 rsbV DVU1996: DVU1996 - quaternary ammonium compound-resistance protein QacC, putative (TIGR), at 2,077,184 to 2,077,513 DVU1996 DORF14879: DORF14879 - no description, at 2,077,515 to 2,079,059 DORF14879 DVU1999: DVU1999 - sulfate transporter family protein (TIGR), at 2,079,560 to 2,081,704 DVU1999 Position (kb) 2077 2078 2079 2080Strain fitness (log2 ratio) -1 0 1 2 3at 2076.585 kb on + strandat 2076.603 kb on - strandat 2076.619 kb on + strandat 2076.629 kb on - strandat 2076.645 kb on - strandat 2076.670 kb on - strandat 2076.813 kb on + strandat 2076.857 kb on - strandat 2076.857 kb on - strandat 2076.902 kb on - strandat 2076.902 kb on - strandat 2076.960 kb on + strandat 2077.062 kb on - strandat 2077.083 kb on - strandat 2077.244 kb on + strand, within DVU1996at 2077.379 kb on + strand, within DVU1996at 2077.470 kb on + strand, within DVU1996at 2077.479 kb on - strand, within DVU1996at 2077.874 kb on + strand, within DORF14879at 2078.046 kb on - strand, within DORF14879at 2078.293 kb on + strand, within DORF14879at 2078.734 kb on - strand, within DORF14879at 2079.263 kb on + strandat 2079.287 kb on - strandat 2079.296 kb on + strandat 2079.299 kb on - strandat 2079.419 kb on + strandat 2079.419 kb on + strandat 2079.582 kb on + strandat 2079.637 kb on - strandat 2079.677 kb on + strandat 2079.677 kb on + strandat 2079.680 kb on - strandat 2079.680 kb on - strandat 2079.680 kb on - strandat 2079.763 kb on - strandat 2079.776 kb on + strand, within DVU1999at 2079.834 kb on - strand, within DVU1999at 2079.910 kb on + strand, within DVU1999at 2080.022 kb on - strand, within DVU1999

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Leucine as nutrient 10mM
remove
2,076,585 + -0.4
2,076,603 - -0.6
2,076,619 + -0.9
2,076,629 - +0.6
2,076,645 - +1.3
2,076,670 - +0.2
2,076,813 + +0.1
2,076,857 - +0.4
2,076,857 - +0.1
2,076,902 - +0.2
2,076,902 - -0.6
2,076,960 + +0.6
2,077,062 - +0.2
2,077,083 - -0.1
2,077,244 + DVU1996 0.18 +1.3
2,077,379 + DVU1996 0.59 +0.0
2,077,470 + DVU1996 0.87 -0.0
2,077,479 - DVU1996 0.89 +0.1
2,077,874 + DORF14879 0.23 -0.4
2,078,046 - DORF14879 0.34 +0.4
2,078,293 + DORF14879 0.50 -0.3
2,078,734 - DORF14879 0.79 -1.5
2,079,263 + -0.2
2,079,287 - -0.1
2,079,296 + -0.7
2,079,299 - +0.2
2,079,419 + -0.2
2,079,419 + -0.4
2,079,582 + +0.1
2,079,637 - +3.1
2,079,677 + +0.1
2,079,677 + -0.8
2,079,680 - +0.3
2,079,680 - +1.1
2,079,680 - +0.2
2,079,763 - +1.0
2,079,776 + DVU1999 0.10 -1.3
2,079,834 - DVU1999 0.13 -0.8
2,079,910 + DVU1999 0.16 -0.5
2,080,022 - DVU1999 0.22 -0.7

Or see this region's nucleotide sequence