Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03068 and SMc03069 are separated by 91 nucleotides SMc03069 and SMc03070 are separated by 8 nucleotides SMc03070 and SMc00761 are separated by 196 nucleotides
SMc03068: SMc03068 - phosphogluconate dehydratase, at 766,634 to 768,454
SMc03068
SMc03069: SMc03069 - 6-phosphogluconolactonase, at 768,546 to 769,244
SMc03069
SMc03070: SMc03070 - glucose-6-phosphate 1-dehydrogenase, at 769,253 to 770,728
SMc03070
SMc00761: SMc00761 - oxidoreductase, at 770,925 to 772,211
SMc00761
Position (kb) 769
770
771 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 768.382 kb on - strand at 768.424 kb on + strand at 768.435 kb on - strand at 768.478 kb on + strand at 768.559 kb on + strand at 768.559 kb on + strand at 768.560 kb on - strand at 768.560 kb on - strand at 768.560 kb on - strand at 768.560 kb on - strand at 768.561 kb on + strand at 768.561 kb on + strand at 768.561 kb on + strand at 768.562 kb on - strand at 768.685 kb on + strand, within SMc03069 at 768.827 kb on + strand, within SMc03069 at 768.827 kb on + strand, within SMc03069 at 769.254 kb on + strand at 769.254 kb on + strand at 769.330 kb on + strand at 769.331 kb on - strand at 769.467 kb on + strand, within SMc03070 at 769.722 kb on + strand, within SMc03070 at 769.722 kb on + strand, within SMc03070 at 769.818 kb on + strand, within SMc03070 at 770.002 kb on + strand, within SMc03070 at 770.046 kb on + strand, within SMc03070 at 770.130 kb on + strand, within SMc03070 at 770.131 kb on - strand, within SMc03070 at 770.188 kb on - strand, within SMc03070 at 770.312 kb on - strand, within SMc03070 at 770.373 kb on + strand, within SMc03070 at 770.374 kb on - strand, within SMc03070 at 770.460 kb on + strand, within SMc03070 at 770.460 kb on + strand, within SMc03070 at 770.461 kb on - strand, within SMc03070 at 770.461 kb on - strand, within SMc03070 at 770.461 kb on - strand, within SMc03070 at 770.692 kb on - strand at 770.841 kb on + strand at 770.841 kb on + strand at 770.842 kb on - strand at 770.869 kb on + strand at 770.870 kb on - strand at 770.948 kb on - strand at 771.067 kb on + strand, within SMc00761 at 771.067 kb on + strand, within SMc00761 at 771.229 kb on + strand, within SMc00761 at 771.252 kb on + strand, within SMc00761 at 771.290 kb on - strand, within SMc00761 at 771.290 kb on - strand, within SMc00761 at 771.340 kb on + strand, within SMc00761 at 771.341 kb on - strand, within SMc00761 at 771.341 kb on - strand, within SMc00761 at 771.479 kb on + strand, within SMc00761 at 771.481 kb on + strand, within SMc00761 at 771.481 kb on + strand, within SMc00761 at 771.482 kb on - strand, within SMc00761 at 771.482 kb on - strand, within SMc00761 at 771.482 kb on - strand, within SMc00761 at 771.482 kb on - strand, within SMc00761
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 768,382 - -2.9 768,424 + -4.0 768,435 - -2.6 768,478 + -4.4 768,559 + -1.2 768,559 + -1.2 768,560 - -1.4 768,560 - +0.4 768,560 - -1.5 768,560 - +0.7 768,561 + -3.1 768,561 + -3.9 768,561 + -1.9 768,562 - -1.0 768,685 + SMc03069 0.20 -1.0 768,827 + SMc03069 0.40 -1.4 768,827 + SMc03069 0.40 -1.2 769,254 + +0.6 769,254 + -1.1 769,330 + -3.4 769,331 - -1.4 769,467 + SMc03070 0.14 -3.8 769,722 + SMc03070 0.32 -3.4 769,722 + SMc03070 0.32 -1.0 769,818 + SMc03070 0.38 -1.9 770,002 + SMc03070 0.51 -0.4 770,046 + SMc03070 0.54 +1.6 770,130 + SMc03070 0.59 -1.0 770,131 - SMc03070 0.59 -2.8 770,188 - SMc03070 0.63 -2.9 770,312 - SMc03070 0.72 -2.6 770,373 + SMc03070 0.76 -1.6 770,374 - SMc03070 0.76 -0.7 770,460 + SMc03070 0.82 -2.4 770,460 + SMc03070 0.82 -3.0 770,461 - SMc03070 0.82 -3.3 770,461 - SMc03070 0.82 -0.0 770,461 - SMc03070 0.82 -3.9 770,692 - -2.7 770,841 + -1.0 770,841 + -0.3 770,842 - -0.4 770,869 + -0.4 770,870 - +0.2 770,948 - -0.5 771,067 + SMc00761 0.11 -0.7 771,067 + SMc00761 0.11 -1.5 771,229 + SMc00761 0.24 +0.2 771,252 + SMc00761 0.25 -0.3 771,290 - SMc00761 0.28 -0.4 771,290 - SMc00761 0.28 +0.4 771,340 + SMc00761 0.32 +0.2 771,341 - SMc00761 0.32 -0.0 771,341 - SMc00761 0.32 +1.6 771,479 + SMc00761 0.43 -0.1 771,481 + SMc00761 0.43 -0.5 771,481 + SMc00761 0.43 +1.0 771,482 - SMc00761 0.43 -0.6 771,482 - SMc00761 0.43 +0.2 771,482 - SMc00761 0.43 -0.6 771,482 - SMc00761 0.43 -1.0
Or see this region's nucleotide sequence