Strain Fitness in Sinorhizobium meliloti 1021 around SMc02976

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02975 and SMc02976 are separated by 105 nucleotidesSMc02976 and SMc02977 are separated by 113 nucleotides SMc02975: SMc02975 - phosphoenolpyruvate carboxykinase regulator transcription regulator protein, at 3,096,884 to 3,097,909 SMc02975 SMc02976: SMc02976 - transcriptional regulator, at 3,098,015 to 3,098,518 SMc02976 SMc02977: SMc02977 - hypothetical protein, at 3,098,632 to 3,099,423 SMc02977 Position (kb) 3098 3099Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3097.277 kb on - strand, within SMc02975at 3097.303 kb on - strand, within SMc02975at 3097.410 kb on + strand, within SMc02975at 3097.677 kb on + strand, within SMc02975at 3097.677 kb on + strand, within SMc02975at 3097.678 kb on - strand, within SMc02975at 3097.678 kb on - strand, within SMc02975at 3097.678 kb on - strand, within SMc02975at 3097.758 kb on + strand, within SMc02975at 3097.882 kb on + strandat 3097.910 kb on - strandat 3097.910 kb on - strandat 3098.178 kb on + strand, within SMc02976at 3098.179 kb on - strand, within SMc02976at 3098.179 kb on - strand, within SMc02976at 3098.179 kb on - strand, within SMc02976at 3098.358 kb on + strand, within SMc02976at 3098.359 kb on - strand, within SMc02976at 3098.546 kb on - strandat 3098.551 kb on + strandat 3098.551 kb on + strandat 3098.551 kb on + strandat 3098.552 kb on - strandat 3098.554 kb on - strandat 3098.581 kb on + strandat 3098.581 kb on + strandat 3098.582 kb on - strandat 3098.627 kb on + strandat 3099.459 kb on - strandat 3099.484 kb on + strandat 3099.484 kb on + strandat 3099.484 kb on + strandat 3099.485 kb on - strandat 3099.485 kb on - strandat 3099.485 kb on - strandat 3099.486 kb on + strandat 3099.486 kb on + strandat 3099.487 kb on - strandat 3099.487 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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3,097,277 - SMc02975 0.38 +0.6
3,097,303 - SMc02975 0.41 -0.1
3,097,410 + SMc02975 0.51 +0.5
3,097,677 + SMc02975 0.77 +0.7
3,097,677 + SMc02975 0.77 +0.6
3,097,678 - SMc02975 0.77 -0.3
3,097,678 - SMc02975 0.77 +0.2
3,097,678 - SMc02975 0.77 +0.1
3,097,758 + SMc02975 0.85 -0.6
3,097,882 + -0.4
3,097,910 - +0.1
3,097,910 - -0.4
3,098,178 + SMc02976 0.32 +1.1
3,098,179 - SMc02976 0.33 -0.1
3,098,179 - SMc02976 0.33 +0.2
3,098,179 - SMc02976 0.33 -1.5
3,098,358 + SMc02976 0.68 +1.4
3,098,359 - SMc02976 0.68 +0.6
3,098,546 - +0.5
3,098,551 + +0.0
3,098,551 + +0.9
3,098,551 + -1.6
3,098,552 - -0.4
3,098,554 - -0.1
3,098,581 + -0.9
3,098,581 + -0.1
3,098,582 - -0.7
3,098,627 + +0.5
3,099,459 - -2.1
3,099,484 + -0.1
3,099,484 + +0.2
3,099,484 + -0.1
3,099,485 - -2.5
3,099,485 - -1.8
3,099,485 - -5.0
3,099,486 + +0.5
3,099,486 + -0.0
3,099,487 - -3.9
3,099,487 - -2.6

Or see this region's nucleotide sequence