Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04462 and SMc02975 are separated by 73 nucleotides SMc02975 and SMc02976 are separated by 105 nucleotides SMc02976 and SMc02977 are separated by 113 nucleotides
SMc04462: SMc04462 - glycerate dehydrogenase, at 3,095,842 to 3,096,810
SMc04462
SMc02975: SMc02975 - phosphoenolpyruvate carboxykinase regulator transcription regulator protein, at 3,096,884 to 3,097,909
SMc02975
SMc02976: SMc02976 - transcriptional regulator, at 3,098,015 to 3,098,518
SMc02976
SMc02977: SMc02977 - hypothetical protein, at 3,098,632 to 3,099,423
SMc02977
Position (kb)
3096
3097
3098 Strain fitness (log2 ratio)
-1
0
1 at 3096.244 kb on - strand, within SMc04462 at 3096.264 kb on - strand, within SMc04462 at 3096.264 kb on - strand, within SMc04462 at 3096.538 kb on - strand, within SMc04462 at 3096.538 kb on - strand, within SMc04462 at 3097.277 kb on - strand, within SMc02975 at 3097.303 kb on - strand, within SMc02975 at 3097.410 kb on + strand, within SMc02975 at 3097.677 kb on + strand, within SMc02975 at 3097.677 kb on + strand, within SMc02975 at 3097.678 kb on - strand, within SMc02975 at 3097.678 kb on - strand, within SMc02975 at 3097.678 kb on - strand, within SMc02975 at 3097.758 kb on + strand, within SMc02975 at 3097.882 kb on + strand at 3097.910 kb on - strand at 3097.910 kb on - strand at 3098.178 kb on + strand, within SMc02976 at 3098.179 kb on - strand, within SMc02976 at 3098.179 kb on - strand, within SMc02976 at 3098.179 kb on - strand, within SMc02976 at 3098.358 kb on + strand, within SMc02976 at 3098.359 kb on - strand, within SMc02976 at 3098.546 kb on - strand at 3098.551 kb on + strand at 3098.551 kb on + strand at 3098.551 kb on + strand at 3098.552 kb on - strand at 3098.554 kb on - strand at 3098.581 kb on + strand at 3098.581 kb on + strand at 3098.582 kb on - strand at 3098.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 3,096,244 - SMc04462 0.41 +0.1 3,096,264 - SMc04462 0.44 -0.1 3,096,264 - SMc04462 0.44 -0.5 3,096,538 - SMc04462 0.72 +0.4 3,096,538 - SMc04462 0.72 -0.3 3,097,277 - SMc02975 0.38 +0.6 3,097,303 - SMc02975 0.41 -0.1 3,097,410 + SMc02975 0.51 +0.5 3,097,677 + SMc02975 0.77 +0.7 3,097,677 + SMc02975 0.77 +0.6 3,097,678 - SMc02975 0.77 -0.3 3,097,678 - SMc02975 0.77 +0.2 3,097,678 - SMc02975 0.77 +0.1 3,097,758 + SMc02975 0.85 -0.6 3,097,882 + -0.4 3,097,910 - +0.1 3,097,910 - -0.4 3,098,178 + SMc02976 0.32 +1.1 3,098,179 - SMc02976 0.33 -0.1 3,098,179 - SMc02976 0.33 +0.2 3,098,179 - SMc02976 0.33 -1.5 3,098,358 + SMc02976 0.68 +1.4 3,098,359 - SMc02976 0.68 +0.6 3,098,546 - +0.5 3,098,551 + +0.0 3,098,551 + +0.9 3,098,551 + -1.6 3,098,552 - -0.4 3,098,554 - -0.1 3,098,581 + -0.9 3,098,581 + -0.1 3,098,582 - -0.7 3,098,627 + +0.5
Or see this region's nucleotide sequence