Strain Fitness in Sinorhizobium meliloti 1021 around SMc02880

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02879 and SMc02880 overlap by 4 nucleotidesSMc02880 and SMc02881 overlap by 4 nucleotides SMc02879: SMc02879 - hypothetical protein, at 235,533 to 236,270 SMc02879 SMc02880: SMc02880 - hypothetical protein, at 236,267 to 237,178 SMc02880 SMc02881: SMc02881 - hypothetical protein, at 237,175 to 238,536 SMc02881 Position (kb) 236 237 238Strain fitness (log2 ratio) -1 0 1 2at 235.791 kb on - strand, within SMc02879at 236.069 kb on - strand, within SMc02879at 236.105 kb on - strand, within SMc02879at 236.259 kb on + strandat 236.259 kb on + strandat 236.673 kb on - strand, within SMc02880at 237.340 kb on - strand, within SMc02881at 237.509 kb on + strand, within SMc02881at 237.509 kb on + strand, within SMc02881at 237.611 kb on + strand, within SMc02881at 237.612 kb on - strand, within SMc02881at 237.649 kb on - strand, within SMc02881at 237.941 kb on + strand, within SMc02881at 238.127 kb on + strand, within SMc02881at 238.170 kb on + strand, within SMc02881at 238.170 kb on + strand, within SMc02881at 238.171 kb on - strand, within SMc02881at 238.171 kb on - strand, within SMc02881

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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235,791 - SMc02879 0.35 -0.5
236,069 - SMc02879 0.73 +0.6
236,105 - SMc02879 0.78 -0.2
236,259 + -0.5
236,259 + -0.5
236,673 - SMc02880 0.45 +1.8
237,340 - SMc02881 0.12 +0.5
237,509 + SMc02881 0.25 +0.8
237,509 + SMc02881 0.25 +0.8
237,611 + SMc02881 0.32 +0.1
237,612 - SMc02881 0.32 -0.1
237,649 - SMc02881 0.35 -0.5
237,941 + SMc02881 0.56 +0.5
238,127 + SMc02881 0.70 +0.2
238,170 + SMc02881 0.73 +0.6
238,170 + SMc02881 0.73 -0.2
238,171 - SMc02881 0.73 +0.2
238,171 - SMc02881 0.73 +0.8

Or see this region's nucleotide sequence