Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02844 and SMc02845 are separated by 67 nucleotides SMc02845 and SMc02846 are separated by 140 nucleotides SMc02846 and SMc02847 are separated by 37 nucleotides SMc02847 and SMc02848 are separated by 166 nucleotides
SMc02844: SMc02844 - transcriptional regulator, at 193,777 to 194,370
SMc02844
SMc02845: SMc02845 - antibiotic resistance protein, at 194,438 to 194,863
SMc02845
SMc02846: SMc02846 - sugar kinase, at 195,004 to 195,996
SMc02846
SMc02847: SMc02847 - hypothetical protein, at 196,034 to 196,402
SMc02847
SMc02848: SMc02848 - hypothetical protein, at 196,569 to 197,240
SMc02848
Position (kb) 195
196 Strain fitness (log2 ratio) -2
-1
0
1
2 at 194.210 kb on + strand, within SMc02844 at 194.210 kb on + strand, within SMc02844 at 194.412 kb on - strand at 194.453 kb on + strand at 194.453 kb on + strand at 194.453 kb on + strand at 194.453 kb on + strand at 194.453 kb on + strand at 194.454 kb on - strand at 194.454 kb on - strand at 194.454 kb on - strand at 194.454 kb on - strand at 194.454 kb on - strand at 194.502 kb on - strand, within SMc02845 at 194.502 kb on - strand, within SMc02845 at 194.502 kb on - strand, within SMc02845 at 194.515 kb on - strand, within SMc02845 at 194.515 kb on - strand, within SMc02845 at 194.515 kb on - strand, within SMc02845 at 194.546 kb on + strand, within SMc02845 at 194.600 kb on + strand, within SMc02845 at 194.904 kb on + strand at 194.926 kb on - strand at 194.966 kb on - strand at 195.013 kb on + strand at 195.014 kb on - strand at 195.143 kb on - strand, within SMc02846 at 195.391 kb on + strand, within SMc02846 at 195.460 kb on - strand, within SMc02846 at 195.460 kb on - strand, within SMc02846 at 195.464 kb on - strand, within SMc02846 at 195.475 kb on + strand, within SMc02846 at 195.783 kb on - strand, within SMc02846 at 195.841 kb on + strand, within SMc02846 at 195.867 kb on + strand, within SMc02846 at 195.868 kb on - strand, within SMc02846 at 196.104 kb on + strand, within SMc02847 at 196.129 kb on + strand, within SMc02847 at 196.130 kb on - strand, within SMc02847 at 196.161 kb on + strand, within SMc02847 at 196.190 kb on + strand, within SMc02847 at 196.190 kb on + strand, within SMc02847 at 196.190 kb on + strand, within SMc02847 at 196.191 kb on - strand, within SMc02847 at 196.191 kb on - strand, within SMc02847 at 196.194 kb on + strand, within SMc02847 at 196.195 kb on - strand, within SMc02847 at 196.195 kb on - strand, within SMc02847 at 196.195 kb on - strand, within SMc02847 at 196.195 kb on - strand, within SMc02847 at 196.203 kb on - strand, within SMc02847 at 196.392 kb on - strand at 196.513 kb on - strand at 196.513 kb on - strand at 196.570 kb on + strand at 196.570 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 194,210 + SMc02844 0.73 +0.5 194,210 + SMc02844 0.73 +0.3 194,412 - -0.4 194,453 + +0.2 194,453 + +0.1 194,453 + -0.8 194,453 + -0.1 194,453 + -1.1 194,454 - -0.3 194,454 - -0.4 194,454 - +0.0 194,454 - +0.6 194,454 - -0.0 194,502 - SMc02845 0.15 +0.8 194,502 - SMc02845 0.15 +0.5 194,502 - SMc02845 0.15 -1.0 194,515 - SMc02845 0.18 -0.5 194,515 - SMc02845 0.18 -0.5 194,515 - SMc02845 0.18 -0.3 194,546 + SMc02845 0.25 -0.5 194,600 + SMc02845 0.38 -0.1 194,904 + +0.0 194,926 - -0.9 194,966 - -0.8 195,013 + -0.6 195,014 - +1.0 195,143 - SMc02846 0.14 +0.5 195,391 + SMc02846 0.39 -0.2 195,460 - SMc02846 0.46 -2.1 195,460 - SMc02846 0.46 -0.4 195,464 - SMc02846 0.46 -0.8 195,475 + SMc02846 0.47 +0.1 195,783 - SMc02846 0.78 +1.8 195,841 + SMc02846 0.84 -0.2 195,867 + SMc02846 0.87 +2.5 195,868 - SMc02846 0.87 -0.1 196,104 + SMc02847 0.19 -0.6 196,129 + SMc02847 0.26 +0.1 196,130 - SMc02847 0.26 +0.1 196,161 + SMc02847 0.34 -0.1 196,190 + SMc02847 0.42 +0.5 196,190 + SMc02847 0.42 +0.3 196,190 + SMc02847 0.42 -0.4 196,191 - SMc02847 0.43 -0.4 196,191 - SMc02847 0.43 -0.5 196,194 + SMc02847 0.43 +0.3 196,195 - SMc02847 0.44 -1.0 196,195 - SMc02847 0.44 -0.3 196,195 - SMc02847 0.44 +0.0 196,195 - SMc02847 0.44 +0.9 196,203 - SMc02847 0.46 -0.2 196,392 - +0.0 196,513 - -0.8 196,513 - +1.5 196,570 + -0.1 196,570 + +0.9
Or see this region's nucleotide sequence