Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02772 and SMc02771 are separated by 46 nucleotides SMc02771 and SMc02770 are separated by 267 nucleotides
SMc02772: SMc02772 - sugar ABC transporter permease, at 22,130 to 23,104
SMc02772
SMc02771: SMc02771 - zinc-type alcohol dehydrogenase, at 23,151 to 24,167
SMc02771
SMc02770: SMc02770 - hypothetical protein, at 24,435 to 25,709
SMc02770
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2 at 22.685 kb on + strand, within SMc02772 at 22.686 kb on - strand, within SMc02772 at 22.686 kb on - strand, within SMc02772 at 22.702 kb on + strand, within SMc02772 at 22.719 kb on - strand, within SMc02772 at 22.787 kb on + strand, within SMc02772 at 22.788 kb on - strand, within SMc02772 at 22.788 kb on - strand, within SMc02772 at 22.796 kb on + strand, within SMc02772 at 22.797 kb on - strand, within SMc02772 at 22.797 kb on - strand, within SMc02772 at 22.797 kb on - strand, within SMc02772 at 22.798 kb on + strand, within SMc02772 at 23.016 kb on + strand at 23.275 kb on - strand, within SMc02771 at 23.279 kb on + strand, within SMc02771 at 23.279 kb on + strand, within SMc02771 at 23.280 kb on - strand, within SMc02771 at 23.280 kb on - strand, within SMc02771 at 23.399 kb on - strand, within SMc02771 at 23.399 kb on - strand, within SMc02771 at 23.647 kb on + strand, within SMc02771 at 23.647 kb on + strand, within SMc02771 at 23.647 kb on + strand, within SMc02771 at 23.648 kb on - strand, within SMc02771 at 23.648 kb on - strand, within SMc02771 at 23.648 kb on - strand, within SMc02771 at 23.648 kb on - strand, within SMc02771 at 23.707 kb on + strand, within SMc02771 at 23.707 kb on + strand, within SMc02771 at 23.708 kb on - strand, within SMc02771 at 23.708 kb on - strand, within SMc02771 at 23.708 kb on - strand, within SMc02771 at 23.708 kb on - strand, within SMc02771 at 23.708 kb on - strand, within SMc02771 at 24.242 kb on - strand at 24.247 kb on - strand at 24.247 kb on - strand at 24.247 kb on - strand at 24.247 kb on - strand at 24.331 kb on - strand at 24.354 kb on + strand at 24.546 kb on + strand at 24.546 kb on + strand at 24.547 kb on - strand at 24.604 kb on - strand, within SMc02770 at 24.704 kb on - strand, within SMc02770 at 24.780 kb on + strand, within SMc02770 at 24.781 kb on - strand, within SMc02770 at 24.834 kb on + strand, within SMc02770 at 24.834 kb on + strand, within SMc02770 at 24.834 kb on + strand, within SMc02770 at 24.834 kb on + strand, within SMc02770 at 24.834 kb on + strand, within SMc02770 at 24.900 kb on + strand, within SMc02770 at 24.900 kb on + strand, within SMc02770 at 24.900 kb on + strand, within SMc02770 at 24.900 kb on + strand, within SMc02770 at 24.901 kb on - strand, within SMc02770 at 24.902 kb on + strand, within SMc02770 at 24.910 kb on - strand, within SMc02770
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 22,685 + SMc02772 0.57 -0.4 22,686 - SMc02772 0.57 +0.2 22,686 - SMc02772 0.57 -0.2 22,702 + SMc02772 0.59 -0.5 22,719 - SMc02772 0.60 -0.1 22,787 + SMc02772 0.67 -0.3 22,788 - SMc02772 0.67 -0.7 22,788 - SMc02772 0.67 -2.0 22,796 + SMc02772 0.68 -0.2 22,797 - SMc02772 0.68 +0.3 22,797 - SMc02772 0.68 -0.6 22,797 - SMc02772 0.68 +0.0 22,798 + SMc02772 0.69 -0.1 23,016 + -2.2 23,275 - SMc02771 0.12 -0.1 23,279 + SMc02771 0.13 -0.7 23,279 + SMc02771 0.13 +1.1 23,280 - SMc02771 0.13 -0.1 23,280 - SMc02771 0.13 -1.1 23,399 - SMc02771 0.24 -0.2 23,399 - SMc02771 0.24 +1.8 23,647 + SMc02771 0.49 +0.1 23,647 + SMc02771 0.49 +0.5 23,647 + SMc02771 0.49 -0.2 23,648 - SMc02771 0.49 -0.6 23,648 - SMc02771 0.49 +0.9 23,648 - SMc02771 0.49 -0.4 23,648 - SMc02771 0.49 -0.0 23,707 + SMc02771 0.55 +0.2 23,707 + SMc02771 0.55 +0.7 23,708 - SMc02771 0.55 +1.0 23,708 - SMc02771 0.55 -0.4 23,708 - SMc02771 0.55 -1.1 23,708 - SMc02771 0.55 -0.7 23,708 - SMc02771 0.55 +0.0 24,242 - -0.4 24,247 - -1.9 24,247 - -0.3 24,247 - +0.1 24,247 - -0.6 24,331 - +0.5 24,354 + -0.1 24,546 + -0.3 24,546 + +1.8 24,547 - +1.0 24,604 - SMc02770 0.13 +0.5 24,704 - SMc02770 0.21 +0.1 24,780 + SMc02770 0.27 +1.6 24,781 - SMc02770 0.27 +0.3 24,834 + SMc02770 0.31 +1.3 24,834 + SMc02770 0.31 -0.8 24,834 + SMc02770 0.31 +0.8 24,834 + SMc02770 0.31 -0.1 24,834 + SMc02770 0.31 +0.0 24,900 + SMc02770 0.36 +2.1 24,900 + SMc02770 0.36 +0.2 24,900 + SMc02770 0.36 -0.2 24,900 + SMc02770 0.36 -0.1 24,901 - SMc02770 0.37 -0.4 24,902 + SMc02770 0.37 -0.0 24,910 - SMc02770 0.37 -0.5
Or see this region's nucleotide sequence