Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02511 and SMc02510 are separated by 6 nucleotides SMc02510 and SMc02509 are separated by 121 nucleotides
SMc02511: SMc02511 - hypothetical protein, at 3,282,467 to 3,283,372
SMc02511
SMc02510: SMc02510 - ferric uptake regulation protein, at 3,283,379 to 3,283,807
SMc02510
SMc02509: SMc02509 - iron-binding periplasmic ABC transporter protein, at 3,283,929 to 3,284,834
SMc02509
Position (kb)
3283
3284 Strain fitness (log2 ratio)
-1
0
1 at 3282.426 kb on - strand at 3282.426 kb on - strand at 3282.536 kb on + strand at 3282.537 kb on - strand at 3282.965 kb on + strand, within SMc02511 at 3282.982 kb on - strand, within SMc02511 at 3283.169 kb on + strand, within SMc02511 at 3283.170 kb on - strand, within SMc02511 at 3283.220 kb on + strand, within SMc02511 at 3283.220 kb on + strand, within SMc02511 at 3283.221 kb on - strand, within SMc02511 at 3283.221 kb on - strand, within SMc02511 at 3283.221 kb on - strand, within SMc02511 at 3283.221 kb on - strand, within SMc02511 at 3283.221 kb on - strand, within SMc02511 at 3283.221 kb on - strand, within SMc02511 at 3283.258 kb on - strand, within SMc02511 at 3283.258 kb on - strand, within SMc02511 at 3283.339 kb on + strand at 3283.340 kb on - strand at 3283.402 kb on - strand at 3283.624 kb on - strand, within SMc02510 at 3283.904 kb on + strand at 3283.904 kb on + strand at 3283.904 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 3,282,426 - +0.4 3,282,426 - +1.3 3,282,536 + -0.5 3,282,537 - +0.6 3,282,965 + SMc02511 0.55 +0.3 3,282,982 - SMc02511 0.57 +0.9 3,283,169 + SMc02511 0.77 -0.7 3,283,170 - SMc02511 0.78 +0.2 3,283,220 + SMc02511 0.83 +0.4 3,283,220 + SMc02511 0.83 -0.3 3,283,221 - SMc02511 0.83 +1.3 3,283,221 - SMc02511 0.83 -1.6 3,283,221 - SMc02511 0.83 -0.2 3,283,221 - SMc02511 0.83 +0.5 3,283,221 - SMc02511 0.83 -0.6 3,283,221 - SMc02511 0.83 +0.5 3,283,258 - SMc02511 0.87 -0.3 3,283,258 - SMc02511 0.87 -1.3 3,283,339 + -0.1 3,283,340 - -0.5 3,283,402 - -1.7 3,283,624 - SMc02510 0.57 -1.0 3,283,904 + -0.0 3,283,904 + +0.2 3,283,904 + -0.8
Or see this region's nucleotide sequence