Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04865 and SMc01038 are separated by 77 nucleotides SMc01038 and SMc01039 overlap by 13 nucleotides SMc01039 and SMc01040 overlap by 20 nucleotides SMc01040 and SMc01041 are separated by 76 nucleotides
SMc04865: SMc04865 - hypothetical protein, at 1,564,169 to 1,564,873
SMc04865
SMc01038: SMc01038 - hypothetical protein, at 1,564,951 to 1,565,400
SMc01038
SMc01039: SMc01039 - hypothetical protein, at 1,565,388 to 1,565,885
SMc01039
SMc01040: SMc01040 - bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,565,866 to 1,567,170
SMc01040
SMc01041: SMc01041 - NIFR3-like protein, at 1,567,247 to 1,568,275
SMc01041
Position (kb)
1565
1566
1567
1568 Strain fitness (log2 ratio)
-1
0
1 at 1565.287 kb on + strand, within SMc01038 at 1565.389 kb on + strand at 1565.390 kb on - strand at 1565.719 kb on + strand, within SMc01039 at 1565.720 kb on - strand, within SMc01039 at 1565.847 kb on + strand at 1565.848 kb on - strand at 1567.128 kb on - strand at 1567.329 kb on + strand at 1567.330 kb on - strand at 1567.568 kb on - strand, within SMc01041 at 1567.617 kb on - strand, within SMc01041 at 1568.060 kb on + strand, within SMc01041
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 1,565,287 + SMc01038 0.75 +0.3 1,565,389 + -0.3 1,565,390 - -0.7 1,565,719 + SMc01039 0.66 -0.1 1,565,720 - SMc01039 0.67 +1.4 1,565,847 + +0.1 1,565,848 - +1.3 1,567,128 - +0.1 1,567,329 + -1.4 1,567,330 - -0.4 1,567,568 - SMc01041 0.31 -1.3 1,567,617 - SMc01041 0.36 -1.0 1,568,060 + SMc01041 0.79 -0.3
Or see this region's nucleotide sequence