Strain Fitness in Sinorhizobium meliloti 1021 around SMc00720

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00721 and SMc00720 are separated by 99 nucleotidesSMc00720 and SMc00719 are separated by 225 nucleotidesSMc00719 and SMc00718 are separated by 63 nucleotides SMc00721: SMc00721 - transposase, at 2,860,415 to 2,861,578 SMc00721 SMc00720: SMc00720 - 2-component receiver domain-containing protein, at 2,861,678 to 2,862,037 SMc00720 SMc00719: SMc00719 - hypoxanthine-guanine phosphoribosyltransferase, at 2,862,263 to 2,862,808 SMc00719 SMc00718: SMc00718 - hypothetical protein, at 2,862,872 to 2,863,312 SMc00718 Position (kb) 2861 2862 2863Strain fitness (log2 ratio) -2 -1 0 1at 2861.570 kb on + strandat 2861.794 kb on - strand, within SMc00720at 2862.139 kb on + strandat 2862.186 kb on + strandat 2862.187 kb on - strandat 2862.187 kb on - strandat 2862.187 kb on - strandat 2862.187 kb on - strandat 2862.253 kb on - strandat 2862.264 kb on + strandat 2862.264 kb on + strandat 2862.315 kb on + strandat 2862.588 kb on + strand, within SMc00719at 2862.706 kb on + strand, within SMc00719at 2862.707 kb on - strand, within SMc00719at 2862.771 kb on + strandat 2862.772 kb on - strandat 2862.784 kb on + strandat 2862.785 kb on - strandat 2862.855 kb on - strandat 2862.864 kb on + strandat 2863.000 kb on + strand, within SMc00718

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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2,861,570 + +0.3
2,861,794 - SMc00720 0.32 -0.2
2,862,139 + -1.4
2,862,186 + -0.2
2,862,187 - +0.6
2,862,187 - +0.0
2,862,187 - +0.4
2,862,187 - -0.5
2,862,253 - -0.2
2,862,264 + -0.8
2,862,264 + -0.5
2,862,315 + -2.2
2,862,588 + SMc00719 0.60 +0.4
2,862,706 + SMc00719 0.81 -0.3
2,862,707 - SMc00719 0.81 +0.4
2,862,771 + +1.2
2,862,772 - +0.6
2,862,784 + +0.6
2,862,785 - +0.7
2,862,855 - -0.7
2,862,864 + -0.3
2,863,000 + SMc00718 0.29 -0.0

Or see this region's nucleotide sequence