Strain Fitness in Sinorhizobium meliloti 1021 around SMc00637

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00638 and SMc00637 are separated by 447 nucleotidesSMc00637 and SMc04459 are separated by 323 nucleotides SMc00638: SMc00638 - HEAT resistant agglutinin 1 protein, at 2,939,231 to 2,940,058 SMc00638 SMc00637: SMc00637 - phosphoglucosamine mutase, at 2,940,506 to 2,941,858 SMc00637 SMc04459: SMc04459 - metalloprotease transmembrane protein, at 2,942,182 to 2,944,119 SMc04459 Position (kb) 2940 2941 2942Strain fitness (log2 ratio) -1 0 1at 2939.596 kb on - strand, within SMc00638at 2939.613 kb on + strand, within SMc00638at 2939.632 kb on - strand, within SMc00638at 2939.632 kb on - strand, within SMc00638at 2939.632 kb on - strand, within SMc00638at 2939.716 kb on + strand, within SMc00638at 2939.717 kb on - strand, within SMc00638at 2939.772 kb on + strand, within SMc00638at 2939.773 kb on - strand, within SMc00638at 2939.773 kb on - strand, within SMc00638at 2939.871 kb on + strand, within SMc00638at 2939.922 kb on + strand, within SMc00638at 2940.005 kb on + strandat 2940.005 kb on + strandat 2940.005 kb on + strandat 2940.006 kb on - strandat 2940.073 kb on - strandat 2940.077 kb on + strandat 2940.077 kb on + strandat 2940.078 kb on - strandat 2940.227 kb on + strandat 2940.228 kb on - strandat 2940.228 kb on - strandat 2940.327 kb on + strandat 2940.327 kb on + strandat 2941.970 kb on - strandat 2941.970 kb on - strandat 2941.990 kb on - strandat 2942.022 kb on - strandat 2942.032 kb on - strandat 2942.287 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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2,939,596 - SMc00638 0.44 -0.5
2,939,613 + SMc00638 0.46 -1.5
2,939,632 - SMc00638 0.48 -0.2
2,939,632 - SMc00638 0.48 -0.8
2,939,632 - SMc00638 0.48 -0.2
2,939,716 + SMc00638 0.59 +0.1
2,939,717 - SMc00638 0.59 -0.3
2,939,772 + SMc00638 0.65 -0.5
2,939,773 - SMc00638 0.65 -0.4
2,939,773 - SMc00638 0.65 +0.1
2,939,871 + SMc00638 0.77 +1.0
2,939,922 + SMc00638 0.83 +0.7
2,940,005 + +0.7
2,940,005 + +0.3
2,940,005 + +1.3
2,940,006 - +0.8
2,940,073 - -0.7
2,940,077 + -0.4
2,940,077 + -0.3
2,940,078 - -0.1
2,940,227 + -0.5
2,940,228 - -0.0
2,940,228 - +0.4
2,940,327 + -1.2
2,940,327 + +0.3
2,941,970 - -1.6
2,941,970 - +0.5
2,941,990 - +0.4
2,942,022 - -0.7
2,942,032 - +0.2
2,942,287 - +0.6

Or see this region's nucleotide sequence