Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0277 and SMa5016 are separated by 241 nucleotides SMa5016 and SMa0279 are separated by 310 nucleotides SMa0279 and SMa0280 are separated by 145 nucleotides SMa0280 and SMa0281 are separated by 54 nucleotides
SMa0277: SMa0277 - hypothetical protein, at 155,598 to 155,948
SMa0277
SMa5016: SMa5016 - hypothetical protein, at 156,190 to 156,489
SMa5016
SMa0279: SMa0279 - hypothetical protein, at 156,800 to 157,411
SMa0279
SMa0280: SMa0280 - hypothetical protein, at 157,557 to 158,345
SMa0280
SMa0281: SMa0281 - MerR family transcriptional regulator, at 158,400 to 158,804
SMa0281
Position (kb) 156
157
158 Strain fitness (log2 ratio) -1
0
1
2 at 155.896 kb on + strand, within SMa0277 at 155.905 kb on + strand, within SMa0277 at 155.984 kb on + strand at 155.984 kb on + strand at 155.985 kb on - strand at 155.985 kb on - strand at 156.181 kb on + strand at 156.182 kb on - strand at 156.191 kb on + strand at 156.192 kb on - strand at 156.192 kb on - strand at 156.330 kb on - strand, within SMa5016 at 156.387 kb on + strand, within SMa5016 at 156.388 kb on - strand, within SMa5016 at 156.413 kb on + strand, within SMa5016 at 156.413 kb on + strand, within SMa5016 at 156.414 kb on - strand, within SMa5016 at 156.419 kb on + strand, within SMa5016 at 156.419 kb on + strand, within SMa5016 at 156.419 kb on + strand, within SMa5016 at 156.420 kb on - strand, within SMa5016 at 156.420 kb on - strand, within SMa5016 at 156.478 kb on - strand at 156.514 kb on + strand at 156.514 kb on + strand at 156.515 kb on - strand at 156.568 kb on + strand at 156.574 kb on + strand at 156.574 kb on + strand at 156.575 kb on - strand at 156.741 kb on - strand at 156.741 kb on - strand at 156.748 kb on - strand at 156.751 kb on - strand at 156.751 kb on - strand at 156.755 kb on - strand at 156.755 kb on - strand at 156.826 kb on - strand at 156.826 kb on - strand at 156.858 kb on + strand at 156.967 kb on + strand, within SMa0279 at 156.967 kb on + strand, within SMa0279 at 156.968 kb on - strand, within SMa0279 at 156.983 kb on + strand, within SMa0279 at 157.261 kb on - strand, within SMa0279 at 157.377 kb on - strand at 157.401 kb on + strand at 157.401 kb on + strand at 157.402 kb on - strand at 157.449 kb on + strand at 157.450 kb on - strand at 157.491 kb on - strand at 157.558 kb on + strand at 157.558 kb on + strand at 157.559 kb on - strand at 157.563 kb on - strand at 157.563 kb on - strand at 157.576 kb on - strand at 157.627 kb on - strand at 157.711 kb on + strand, within SMa0280 at 157.712 kb on - strand, within SMa0280 at 157.712 kb on - strand, within SMa0280 at 157.825 kb on + strand, within SMa0280 at 157.826 kb on - strand, within SMa0280 at 157.831 kb on + strand, within SMa0280 at 157.837 kb on + strand, within SMa0280 at 157.844 kb on - strand, within SMa0280 at 157.844 kb on - strand, within SMa0280 at 157.872 kb on + strand at 157.873 kb on + strand, within SMa0280 at 157.873 kb on + strand, within SMa0280 at 157.873 kb on + strand, within SMa0280 at 157.874 kb on - strand, within SMa0280 at 157.874 kb on - strand, within SMa0280 at 157.974 kb on - strand, within SMa0280 at 158.054 kb on - strand, within SMa0280 at 158.286 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 155,896 + SMa0277 0.85 -1.5 155,905 + SMa0277 0.87 -0.3 155,984 + -0.7 155,984 + +1.0 155,985 - -1.7 155,985 - +0.3 156,181 + +0.6 156,182 - -0.3 156,191 + -0.4 156,192 - +1.2 156,192 - -0.3 156,330 - SMa5016 0.47 -0.7 156,387 + SMa5016 0.66 +1.0 156,388 - SMa5016 0.66 -0.2 156,413 + SMa5016 0.74 -0.6 156,413 + SMa5016 0.74 -0.4 156,414 - SMa5016 0.75 +0.2 156,419 + SMa5016 0.76 -1.5 156,419 + SMa5016 0.76 -0.7 156,419 + SMa5016 0.76 -0.5 156,420 - SMa5016 0.77 -0.3 156,420 - SMa5016 0.77 +1.3 156,478 - +1.8 156,514 + +0.2 156,514 + +1.8 156,515 - +0.5 156,568 + +0.7 156,574 + -1.2 156,574 + -0.4 156,575 - +0.6 156,741 - -0.7 156,741 - -1.1 156,748 - -0.3 156,751 - +0.8 156,751 - -0.3 156,755 - -0.1 156,755 - -1.3 156,826 - -0.6 156,826 - +0.1 156,858 + -0.1 156,967 + SMa0279 0.27 +0.3 156,967 + SMa0279 0.27 -1.2 156,968 - SMa0279 0.27 -0.3 156,983 + SMa0279 0.30 -1.3 157,261 - SMa0279 0.75 -0.1 157,377 - +0.4 157,401 + -0.6 157,401 + -0.7 157,402 - +0.6 157,449 + +0.7 157,450 - +0.3 157,491 - -1.1 157,558 + -0.4 157,558 + +1.2 157,559 - -0.1 157,563 - -0.4 157,563 - -0.0 157,576 - +0.1 157,627 - -0.1 157,711 + SMa0280 0.20 -0.2 157,712 - SMa0280 0.20 +0.2 157,712 - SMa0280 0.20 -0.6 157,825 + SMa0280 0.34 +0.0 157,826 - SMa0280 0.34 -0.0 157,831 + SMa0280 0.35 -0.2 157,837 + SMa0280 0.35 -0.5 157,844 - SMa0280 0.36 -0.8 157,844 - SMa0280 0.36 +0.8 157,872 + +1.2 157,873 + SMa0280 0.40 -0.5 157,873 + SMa0280 0.40 +0.1 157,873 + SMa0280 0.40 +0.4 157,874 - SMa0280 0.40 +1.0 157,874 - SMa0280 0.40 +0.4 157,974 - SMa0280 0.53 -0.4 158,054 - SMa0280 0.63 -0.2 158,286 + -1.2
Or see this region's nucleotide sequence