Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0062 and SMa0063 are separated by 129 nucleotides SMa0063 and SMa0064 are separated by 2 nucleotides SMa0064 and SMa0065 are separated by 62 nucleotides SMa0065 and SMa0067 are separated by 57 nucleotides
SMa0062: SMa0062 - GntR family transcriptional regulator, at 32,634 to 33,323
SMa0062
SMa0063: SMa0063 - GntR family transcriptional regulator, at 33,453 to 34,187
SMa0063
SMa0064: SMa0064 - dehydratase/enolase, at 34,190 to 35,392
SMa0064
SMa0065: SMa0065 - GntR family transcriptional regulator, at 35,455 to 36,147
SMa0065
SMa0067: SMa0067 - ABC transporter substrate-binding protein, at 36,205 to 37,167
SMa0067
Position (kb) 34
35
36 Strain fitness (log2 ratio) -2
-1
0
1
2 at 33.288 kb on + strand at 33.351 kb on + strand at 33.351 kb on + strand at 33.351 kb on + strand at 33.352 kb on - strand at 33.616 kb on + strand, within SMa0063 at 33.642 kb on + strand, within SMa0063 at 33.643 kb on - strand, within SMa0063 at 34.010 kb on + strand, within SMa0063 at 34.064 kb on + strand, within SMa0063 at 34.157 kb on - strand at 34.183 kb on - strand at 34.238 kb on - strand at 34.319 kb on + strand, within SMa0064 at 34.319 kb on + strand, within SMa0064 at 34.319 kb on + strand, within SMa0064 at 34.320 kb on - strand, within SMa0064 at 34.320 kb on - strand, within SMa0064 at 34.320 kb on - strand, within SMa0064 at 34.320 kb on - strand, within SMa0064 at 34.320 kb on - strand, within SMa0064 at 34.320 kb on - strand, within SMa0064 at 34.320 kb on - strand, within SMa0064 at 34.401 kb on - strand, within SMa0064 at 34.401 kb on - strand, within SMa0064 at 34.401 kb on - strand, within SMa0064 at 34.542 kb on - strand, within SMa0064 at 34.542 kb on - strand, within SMa0064 at 34.542 kb on - strand, within SMa0064 at 34.542 kb on - strand, within SMa0064 at 34.542 kb on - strand, within SMa0064 at 34.542 kb on - strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.565 kb on + strand, within SMa0064 at 34.566 kb on - strand, within SMa0064 at 34.566 kb on - strand, within SMa0064 at 34.567 kb on + strand, within SMa0064 at 34.628 kb on + strand, within SMa0064 at 34.629 kb on - strand, within SMa0064 at 34.629 kb on - strand, within SMa0064 at 34.754 kb on - strand, within SMa0064 at 34.754 kb on - strand, within SMa0064 at 34.899 kb on - strand, within SMa0064 at 35.055 kb on + strand, within SMa0064 at 35.056 kb on - strand, within SMa0064 at 35.234 kb on + strand, within SMa0064 at 35.237 kb on + strand, within SMa0064 at 35.237 kb on + strand, within SMa0064 at 35.237 kb on + strand, within SMa0064 at 35.238 kb on - strand, within SMa0064 at 35.238 kb on - strand, within SMa0064 at 35.250 kb on - strand, within SMa0064 at 35.261 kb on - strand, within SMa0064 at 35.261 kb on - strand, within SMa0064 at 35.597 kb on + strand, within SMa0065 at 35.683 kb on + strand, within SMa0065 at 35.683 kb on + strand, within SMa0065 at 35.683 kb on + strand, within SMa0065 at 35.683 kb on + strand, within SMa0065 at 35.684 kb on - strand, within SMa0065 at 35.684 kb on - strand, within SMa0065 at 35.684 kb on - strand, within SMa0065 at 35.684 kb on - strand, within SMa0065 at 35.684 kb on - strand, within SMa0065 at 36.020 kb on + strand, within SMa0065 at 36.021 kb on - strand, within SMa0065 at 36.021 kb on - strand, within SMa0065 at 36.161 kb on + strand at 36.162 kb on - strand at 36.185 kb on - strand at 36.210 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 33,288 + +1.0 33,351 + -0.0 33,351 + +0.3 33,351 + -0.2 33,352 - -0.2 33,616 + SMa0063 0.22 +0.7 33,642 + SMa0063 0.26 -0.3 33,643 - SMa0063 0.26 +0.1 34,010 + SMa0063 0.76 +1.4 34,064 + SMa0063 0.83 +0.4 34,157 - -0.5 34,183 - +0.2 34,238 - -0.2 34,319 + SMa0064 0.11 -0.3 34,319 + SMa0064 0.11 -1.1 34,319 + SMa0064 0.11 +0.1 34,320 - SMa0064 0.11 -0.6 34,320 - SMa0064 0.11 -0.4 34,320 - SMa0064 0.11 -0.1 34,320 - SMa0064 0.11 +0.3 34,320 - SMa0064 0.11 -0.6 34,320 - SMa0064 0.11 -0.6 34,320 - SMa0064 0.11 +0.3 34,401 - SMa0064 0.18 +0.2 34,401 - SMa0064 0.18 +0.1 34,401 - SMa0064 0.18 +0.2 34,542 - SMa0064 0.29 -0.6 34,542 - SMa0064 0.29 -0.4 34,542 - SMa0064 0.29 +1.8 34,542 - SMa0064 0.29 -0.8 34,542 - SMa0064 0.29 +0.0 34,542 - SMa0064 0.29 +0.1 34,565 + SMa0064 0.31 -0.4 34,565 + SMa0064 0.31 +1.4 34,565 + SMa0064 0.31 +0.8 34,565 + SMa0064 0.31 +0.1 34,565 + SMa0064 0.31 +0.1 34,565 + SMa0064 0.31 +0.5 34,565 + SMa0064 0.31 -0.1 34,565 + SMa0064 0.31 -1.5 34,565 + SMa0064 0.31 -1.9 34,566 - SMa0064 0.31 -0.6 34,566 - SMa0064 0.31 +1.8 34,567 + SMa0064 0.31 +0.9 34,628 + SMa0064 0.36 +0.3 34,629 - SMa0064 0.36 -0.4 34,629 - SMa0064 0.36 +1.3 34,754 - SMa0064 0.47 +0.4 34,754 - SMa0064 0.47 -0.9 34,899 - SMa0064 0.59 -0.7 35,055 + SMa0064 0.72 +0.1 35,056 - SMa0064 0.72 -0.5 35,234 + SMa0064 0.87 +0.6 35,237 + SMa0064 0.87 -1.0 35,237 + SMa0064 0.87 -1.2 35,237 + SMa0064 0.87 -0.4 35,238 - SMa0064 0.87 -1.8 35,238 - SMa0064 0.87 +0.3 35,250 - SMa0064 0.88 +0.3 35,261 - SMa0064 0.89 -0.2 35,261 - SMa0064 0.89 +0.2 35,597 + SMa0065 0.20 -1.1 35,683 + SMa0065 0.33 -0.3 35,683 + SMa0065 0.33 +0.3 35,683 + SMa0065 0.33 -0.3 35,683 + SMa0065 0.33 +0.1 35,684 - SMa0065 0.33 +1.3 35,684 - SMa0065 0.33 -0.7 35,684 - SMa0065 0.33 +0.1 35,684 - SMa0065 0.33 -0.9 35,684 - SMa0065 0.33 -0.1 36,020 + SMa0065 0.82 -1.1 36,021 - SMa0065 0.82 +1.8 36,021 - SMa0065 0.82 -0.2 36,161 + +0.6 36,162 - +1.2 36,185 - +0.2 36,210 - +0.8
Or see this region's nucleotide sequence