Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21570

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21568 and SM_b21569 are separated by 232 nucleotidesSM_b21569 and SM_b21570 are separated by 46 nucleotidesSM_b21570 and SM_b21571 are separated by 141 nucleotidesSM_b21571 and SM_b21572 are separated by 97 nucleotides SM_b21568: SM_b21568 - hypothetical protein, at 1,106,876 to 1,107,148 _b21568 SM_b21569: SM_b21569 - transcriptional regulator, at 1,107,381 to 1,107,980 _b21569 SM_b21570: SM_b21570 - NADH-dependent oxidase, at 1,108,027 to 1,110,063 _b21570 SM_b21571: SM_b21571 - TetR family transcriptional regulator, at 1,110,205 to 1,110,831 _b21571 SM_b21572: SM_b21572 - amino acid uptake ABC transporter substrate-binding protein precursor, at 1,110,929 to 1,111,930 _b21572 Position (kb) 1108 1109 1110 1111Strain fitness (log2 ratio) -2 -1 0 1 2at 1107.049 kb on + strand, within SM_b21568at 1107.049 kb on + strand, within SM_b21568at 1107.049 kb on + strand, within SM_b21568at 1107.050 kb on - strand, within SM_b21568at 1107.279 kb on - strandat 1107.400 kb on - strandat 1107.467 kb on - strand, within SM_b21569at 1107.541 kb on + strand, within SM_b21569at 1107.541 kb on + strand, within SM_b21569at 1107.541 kb on + strand, within SM_b21569at 1107.984 kb on + strandat 1107.984 kb on + strandat 1107.985 kb on - strandat 1107.985 kb on - strandat 1107.985 kb on - strandat 1107.985 kb on - strandat 1107.995 kb on - strandat 1108.032 kb on + strandat 1108.033 kb on - strandat 1108.048 kb on + strandat 1108.058 kb on + strandat 1108.217 kb on + strandat 1108.218 kb on - strandat 1108.218 kb on - strandat 1108.218 kb on - strandat 1108.352 kb on + strand, within SM_b21570at 1108.353 kb on - strand, within SM_b21570at 1108.362 kb on + strand, within SM_b21570at 1108.363 kb on - strand, within SM_b21570at 1108.397 kb on + strand, within SM_b21570at 1108.398 kb on - strand, within SM_b21570at 1108.398 kb on - strand, within SM_b21570at 1108.744 kb on + strand, within SM_b21570at 1108.744 kb on + strand, within SM_b21570at 1108.745 kb on - strand, within SM_b21570at 1108.745 kb on - strand, within SM_b21570at 1108.980 kb on - strand, within SM_b21570at 1108.997 kb on + strand, within SM_b21570at 1108.997 kb on + strand, within SM_b21570at 1108.997 kb on + strand, within SM_b21570at 1108.997 kb on + strand, within SM_b21570at 1108.998 kb on - strand, within SM_b21570at 1108.998 kb on - strand, within SM_b21570at 1108.998 kb on - strand, within SM_b21570at 1109.015 kb on + strand, within SM_b21570at 1109.015 kb on + strand, within SM_b21570at 1109.015 kb on + strand, within SM_b21570at 1109.016 kb on - strand, within SM_b21570at 1109.016 kb on - strand, within SM_b21570at 1109.077 kb on - strand, within SM_b21570at 1109.207 kb on - strand, within SM_b21570at 1109.254 kb on - strand, within SM_b21570at 1109.260 kb on + strand, within SM_b21570at 1109.260 kb on + strand, within SM_b21570at 1109.260 kb on + strand, within SM_b21570at 1109.261 kb on - strand, within SM_b21570at 1109.312 kb on + strand, within SM_b21570at 1109.313 kb on - strand, within SM_b21570at 1109.313 kb on - strand, within SM_b21570at 1109.556 kb on - strand, within SM_b21570at 1109.835 kb on - strand, within SM_b21570at 1109.835 kb on - strand, within SM_b21570at 1109.934 kb on + strandat 1110.035 kb on + strandat 1110.036 kb on - strandat 1110.096 kb on + strandat 1110.096 kb on + strandat 1110.097 kb on - strandat 1110.097 kb on - strandat 1110.200 kb on + strandat 1110.268 kb on + strand, within SM_b21571at 1110.353 kb on - strand, within SM_b21571at 1110.431 kb on + strand, within SM_b21571at 1110.448 kb on + strand, within SM_b21571at 1110.449 kb on - strand, within SM_b21571at 1110.449 kb on - strand, within SM_b21571at 1110.449 kb on - strand, within SM_b21571at 1110.660 kb on - strand, within SM_b21571at 1110.660 kb on - strand, within SM_b21571at 1110.660 kb on - strand, within SM_b21571at 1110.660 kb on - strand, within SM_b21571at 1110.676 kb on + strand, within SM_b21571at 1110.677 kb on - strand, within SM_b21571at 1110.694 kb on + strand, within SM_b21571at 1110.695 kb on - strand, within SM_b21571at 1110.696 kb on + strand, within SM_b21571at 1110.722 kb on + strand, within SM_b21571at 1110.722 kb on + strand, within SM_b21571at 1110.722 kb on + strand, within SM_b21571at 1110.723 kb on - strand, within SM_b21571at 1110.829 kb on + strandat 1110.830 kb on - strandat 1110.871 kb on + strandat 1110.873 kb on + strandat 1110.874 kb on - strandat 1110.874 kb on - strandat 1110.927 kb on + strandat 1110.927 kb on + strandat 1110.928 kb on - strandat 1110.928 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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1,107,049 + SM_b21568 0.63 +0.4
1,107,049 + SM_b21568 0.63 -1.5
1,107,049 + SM_b21568 0.63 -0.3
1,107,050 - SM_b21568 0.64 +0.2
1,107,279 - -0.7
1,107,400 - -0.8
1,107,467 - SM_b21569 0.14 +1.6
1,107,541 + SM_b21569 0.27 -0.0
1,107,541 + SM_b21569 0.27 -1.8
1,107,541 + SM_b21569 0.27 +0.8
1,107,984 + +0.6
1,107,984 + -0.6
1,107,985 - +0.0
1,107,985 - -0.2
1,107,985 - -0.1
1,107,985 - -0.0
1,107,995 - -0.0
1,108,032 + -0.5
1,108,033 - +0.1
1,108,048 + -0.0
1,108,058 + +0.3
1,108,217 + +0.3
1,108,218 - -0.5
1,108,218 - -0.1
1,108,218 - +0.3
1,108,352 + SM_b21570 0.16 -0.3
1,108,353 - SM_b21570 0.16 +0.3
1,108,362 + SM_b21570 0.16 +0.1
1,108,363 - SM_b21570 0.16 +0.2
1,108,397 + SM_b21570 0.18 -0.0
1,108,398 - SM_b21570 0.18 +1.5
1,108,398 - SM_b21570 0.18 -0.8
1,108,744 + SM_b21570 0.35 -0.0
1,108,744 + SM_b21570 0.35 -2.4
1,108,745 - SM_b21570 0.35 +0.4
1,108,745 - SM_b21570 0.35 +0.5
1,108,980 - SM_b21570 0.47 -0.9
1,108,997 + SM_b21570 0.48 -1.5
1,108,997 + SM_b21570 0.48 -0.0
1,108,997 + SM_b21570 0.48 -1.4
1,108,997 + SM_b21570 0.48 -0.1
1,108,998 - SM_b21570 0.48 +0.4
1,108,998 - SM_b21570 0.48 -0.3
1,108,998 - SM_b21570 0.48 +0.5
1,109,015 + SM_b21570 0.49 -0.8
1,109,015 + SM_b21570 0.49 +0.3
1,109,015 + SM_b21570 0.49 -0.5
1,109,016 - SM_b21570 0.49 -0.5
1,109,016 - SM_b21570 0.49 -0.1
1,109,077 - SM_b21570 0.52 -0.2
1,109,207 - SM_b21570 0.58 -0.3
1,109,254 - SM_b21570 0.60 -2.5
1,109,260 + SM_b21570 0.61 +1.2
1,109,260 + SM_b21570 0.61 +0.5
1,109,260 + SM_b21570 0.61 -1.4
1,109,261 - SM_b21570 0.61 -0.2
1,109,312 + SM_b21570 0.63 +0.2
1,109,313 - SM_b21570 0.63 -0.5
1,109,313 - SM_b21570 0.63 +0.2
1,109,556 - SM_b21570 0.75 -0.4
1,109,835 - SM_b21570 0.89 -0.6
1,109,835 - SM_b21570 0.89 -0.2
1,109,934 + -0.1
1,110,035 + +0.8
1,110,036 - -1.0
1,110,096 + -0.3
1,110,096 + -0.2
1,110,097 - -0.8
1,110,097 - -0.1
1,110,200 + +0.2
1,110,268 + SM_b21571 0.10 +0.3
1,110,353 - SM_b21571 0.24 +1.2
1,110,431 + SM_b21571 0.36 +0.8
1,110,448 + SM_b21571 0.39 +0.2
1,110,449 - SM_b21571 0.39 -0.5
1,110,449 - SM_b21571 0.39 +2.1
1,110,449 - SM_b21571 0.39 +0.4
1,110,660 - SM_b21571 0.73 +0.1
1,110,660 - SM_b21571 0.73 -1.3
1,110,660 - SM_b21571 0.73 +0.2
1,110,660 - SM_b21571 0.73 -0.3
1,110,676 + SM_b21571 0.75 -0.4
1,110,677 - SM_b21571 0.75 -0.4
1,110,694 + SM_b21571 0.78 -1.8
1,110,695 - SM_b21571 0.78 +0.5
1,110,696 + SM_b21571 0.78 +1.0
1,110,722 + SM_b21571 0.82 -0.5
1,110,722 + SM_b21571 0.82 +2.5
1,110,722 + SM_b21571 0.82 -0.2
1,110,723 - SM_b21571 0.83 -0.4
1,110,829 + +0.7
1,110,830 - -0.5
1,110,871 + -0.6
1,110,873 + +0.5
1,110,874 - +1.5
1,110,874 - -0.1
1,110,927 + -0.6
1,110,927 + -0.0
1,110,928 - +0.9
1,110,928 - -0.2

Or see this region's nucleotide sequence