Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21315 and SM_b21316 overlap by 4 nucleotides SM_b21316 and SM_b21317 are separated by 196 nucleotides SM_b21317 and SM_b21318 are separated by 137 nucleotides
SM_b21315: SM_b21315 - HlyD family protein secretion protein, at 980,517 to 981,938
_b21315
SM_b21316: SM_b21316 - ABC transporter ATP-binding protein/permease, at 981,935 to 983,704
_b21316
SM_b21317: SM_b21317 - transcriptional activator of exopolysaccharide II synthesis, MarR family protein, at 983,901 to 984,485
_b21317
SM_b21318: SM_b21318 - glycosyltransferase, forming alpha-glycosyl linkages protein, at 984,623 to 985,876
_b21318
Position (kb) 981
982
983
984 Strain fitness (log2 ratio) -2
-1
0
1 at 981.237 kb on - strand, within SM_b21315 at 981.319 kb on + strand, within SM_b21315 at 981.571 kb on - strand, within SM_b21315 at 981.659 kb on + strand, within SM_b21315 at 981.660 kb on - strand, within SM_b21315 at 982.197 kb on + strand, within SM_b21316 at 982.271 kb on - strand, within SM_b21316 at 982.271 kb on - strand, within SM_b21316 at 982.271 kb on - strand, within SM_b21316 at 982.271 kb on - strand, within SM_b21316 at 982.417 kb on - strand, within SM_b21316 at 982.417 kb on - strand, within SM_b21316 at 982.455 kb on + strand, within SM_b21316 at 982.455 kb on + strand, within SM_b21316 at 982.456 kb on - strand, within SM_b21316 at 982.558 kb on + strand, within SM_b21316 at 982.632 kb on + strand, within SM_b21316 at 983.074 kb on + strand, within SM_b21316 at 983.074 kb on + strand, within SM_b21316 at 983.075 kb on - strand, within SM_b21316 at 983.077 kb on + strand, within SM_b21316 at 983.077 kb on + strand, within SM_b21316 at 983.145 kb on - strand, within SM_b21316 at 983.413 kb on - strand, within SM_b21316 at 983.474 kb on - strand, within SM_b21316 at 983.474 kb on - strand, within SM_b21316 at 983.518 kb on + strand, within SM_b21316 at 983.518 kb on + strand, within SM_b21316 at 983.518 kb on + strand, within SM_b21316 at 983.518 kb on + strand, within SM_b21316 at 983.519 kb on - strand, within SM_b21316 at 983.519 kb on - strand, within SM_b21316 at 983.519 kb on - strand, within SM_b21316 at 983.520 kb on + strand, within SM_b21316 at 983.520 kb on + strand, within SM_b21316 at 983.520 kb on + strand, within SM_b21316 at 983.521 kb on - strand, within SM_b21316 at 983.521 kb on - strand, within SM_b21316 at 983.574 kb on + strand at 983.575 kb on - strand at 983.674 kb on + strand at 983.674 kb on + strand at 983.675 kb on - strand at 983.675 kb on - strand at 983.696 kb on - strand at 983.696 kb on - strand at 983.717 kb on + strand at 983.717 kb on + strand at 983.718 kb on - strand at 983.777 kb on - strand at 983.788 kb on - strand at 983.891 kb on + strand at 983.926 kb on + strand at 983.926 kb on + strand at 983.927 kb on - strand at 983.927 kb on - strand at 984.216 kb on + strand, within SM_b21317 at 984.216 kb on + strand, within SM_b21317 at 984.216 kb on + strand, within SM_b21317 at 984.217 kb on - strand, within SM_b21317 at 984.217 kb on - strand, within SM_b21317 at 984.237 kb on + strand, within SM_b21317 at 984.237 kb on + strand, within SM_b21317 at 984.238 kb on - strand, within SM_b21317 at 984.238 kb on - strand, within SM_b21317 at 984.238 kb on - strand, within SM_b21317 at 984.238 kb on - strand, within SM_b21317 at 984.366 kb on - strand, within SM_b21317 at 984.475 kb on - strand at 984.514 kb on - strand at 984.550 kb on + strand at 984.622 kb on + strand at 984.622 kb on + strand at 984.622 kb on + strand at 984.623 kb on - strand at 984.623 kb on - strand at 984.623 kb on - strand at 984.636 kb on + strand at 984.636 kb on + strand at 984.637 kb on - strand at 984.637 kb on - strand at 984.637 kb on - strand at 984.637 kb on - strand at 984.645 kb on + strand at 984.645 kb on + strand at 984.646 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 981,237 - SM_b21315 0.51 -0.4 981,319 + SM_b21315 0.56 -0.3 981,571 - SM_b21315 0.74 -0.5 981,659 + SM_b21315 0.80 +0.4 981,660 - SM_b21315 0.80 -0.3 982,197 + SM_b21316 0.15 -0.1 982,271 - SM_b21316 0.19 +0.4 982,271 - SM_b21316 0.19 +1.0 982,271 - SM_b21316 0.19 +0.0 982,271 - SM_b21316 0.19 -0.4 982,417 - SM_b21316 0.27 -0.9 982,417 - SM_b21316 0.27 +0.4 982,455 + SM_b21316 0.29 +0.7 982,455 + SM_b21316 0.29 +0.8 982,456 - SM_b21316 0.29 -0.6 982,558 + SM_b21316 0.35 +0.1 982,632 + SM_b21316 0.39 +1.0 983,074 + SM_b21316 0.64 -0.5 983,074 + SM_b21316 0.64 +0.8 983,075 - SM_b21316 0.64 +0.6 983,077 + SM_b21316 0.65 +0.8 983,077 + SM_b21316 0.65 +0.0 983,145 - SM_b21316 0.68 +0.2 983,413 - SM_b21316 0.84 +0.1 983,474 - SM_b21316 0.87 -0.3 983,474 - SM_b21316 0.87 -0.2 983,518 + SM_b21316 0.89 +0.3 983,518 + SM_b21316 0.89 +0.8 983,518 + SM_b21316 0.89 +0.8 983,518 + SM_b21316 0.89 -0.0 983,519 - SM_b21316 0.89 +0.1 983,519 - SM_b21316 0.89 -0.5 983,519 - SM_b21316 0.89 -0.0 983,520 + SM_b21316 0.90 +0.4 983,520 + SM_b21316 0.90 +0.2 983,520 + SM_b21316 0.90 -0.6 983,521 - SM_b21316 0.90 -0.2 983,521 - SM_b21316 0.90 -0.2 983,574 + +1.4 983,575 - +0.2 983,674 + +0.2 983,674 + +1.0 983,675 - +0.1 983,675 - +0.1 983,696 - +0.1 983,696 - +0.7 983,717 + +1.7 983,717 + +0.8 983,718 - -0.3 983,777 - -0.5 983,788 - -1.2 983,891 + -1.0 983,926 + -1.0 983,926 + -0.6 983,927 - -1.0 983,927 - -0.3 984,216 + SM_b21317 0.54 -0.4 984,216 + SM_b21317 0.54 -0.9 984,216 + SM_b21317 0.54 -0.4 984,217 - SM_b21317 0.54 +0.2 984,217 - SM_b21317 0.54 +0.2 984,237 + SM_b21317 0.57 -2.2 984,237 + SM_b21317 0.57 -1.0 984,238 - SM_b21317 0.58 +0.4 984,238 - SM_b21317 0.58 -1.0 984,238 - SM_b21317 0.58 -1.0 984,238 - SM_b21317 0.58 -0.4 984,366 - SM_b21317 0.79 -0.0 984,475 - +0.4 984,514 - -0.2 984,550 + +1.4 984,622 + +0.0 984,622 + +0.4 984,622 + -0.1 984,623 - +0.1 984,623 - -0.1 984,623 - -0.0 984,636 + +0.4 984,636 + -0.7 984,637 - -1.5 984,637 - +1.4 984,637 - +0.0 984,637 - -0.2 984,645 + -0.2 984,645 + +0.8 984,646 - +0.2
Or see this region's nucleotide sequence