Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS10495

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS10490 and RS_RS10495 are separated by 55 nucleotidesRS_RS10495 and RS_RS10500 are separated by 139 nucleotides RS_RS10490: RS_RS10490 - ABC transporter permease, at 2,261,495 to 2,264,026 _RS10490 RS_RS10495: RS_RS10495 - hypothetical protein, at 2,264,082 to 2,265,182 _RS10495 RS_RS10500: RS_RS10500 - tungsten ABC transporter substrate-binding protein, at 2,265,322 to 2,266,164 _RS10500 Position (kb) 2264 2265 2266Strain fitness (log2 ratio) -2 -1 0 1at 2263.374 kb on + strand, within RS_RS10490at 2264.039 kb on + strandat 2264.272 kb on + strand, within RS_RS10495at 2264.272 kb on + strand, within RS_RS10495at 2264.272 kb on + strand, within RS_RS10495at 2264.272 kb on + strand, within RS_RS10495at 2264.272 kb on + strand, within RS_RS10495at 2264.275 kb on + strand, within RS_RS10495at 2264.275 kb on + strand, within RS_RS10495at 2264.275 kb on + strand, within RS_RS10495at 2264.275 kb on + strand, within RS_RS10495at 2264.276 kb on - strand, within RS_RS10495at 2264.407 kb on + strand, within RS_RS10495at 2264.408 kb on - strand, within RS_RS10495at 2265.044 kb on - strand, within RS_RS10495at 2265.184 kb on - strandat 2265.203 kb on + strandat 2265.204 kb on - strandat 2265.640 kb on + strand, within RS_RS10500at 2265.793 kb on + strand, within RS_RS10500at 2265.793 kb on + strand, within RS_RS10500at 2265.794 kb on - strand, within RS_RS10500at 2265.835 kb on + strand, within RS_RS10500at 2265.836 kb on - strand, within RS_RS10500at 2265.897 kb on + strand, within RS_RS10500at 2265.897 kb on + strand, within RS_RS10500at 2265.897 kb on + strand, within RS_RS10500at 2265.897 kb on + strand, within RS_RS10500at 2265.898 kb on - strand, within RS_RS10500at 2265.898 kb on - strand, within RS_RS10500at 2265.898 kb on - strand, within RS_RS10500at 2265.919 kb on + strand, within RS_RS10500at 2265.920 kb on - strand, within RS_RS10500at 2266.033 kb on + strand, within RS_RS10500at 2266.033 kb on + strand, within RS_RS10500at 2266.034 kb on - strand, within RS_RS10500at 2266.034 kb on - strand, within RS_RS10500at 2266.034 kb on - strand, within RS_RS10500at 2266.136 kb on - strandat 2266.136 kb on - strandat 2266.136 kb on - strandat 2266.162 kb on + strandat 2266.163 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
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2,263,374 + RS_RS10490 0.74 +0.1
2,264,039 + -0.0
2,264,272 + RS_RS10495 0.17 +0.1
2,264,272 + RS_RS10495 0.17 +0.8
2,264,272 + RS_RS10495 0.17 -0.1
2,264,272 + RS_RS10495 0.17 +0.1
2,264,272 + RS_RS10495 0.17 -0.7
2,264,275 + RS_RS10495 0.18 +0.4
2,264,275 + RS_RS10495 0.18 -0.4
2,264,275 + RS_RS10495 0.18 +0.2
2,264,275 + RS_RS10495 0.18 -0.2
2,264,276 - RS_RS10495 0.18 +0.5
2,264,407 + RS_RS10495 0.30 +0.8
2,264,408 - RS_RS10495 0.30 +0.3
2,265,044 - RS_RS10495 0.87 +0.3
2,265,184 - +0.1
2,265,203 + -0.4
2,265,204 - -0.8
2,265,640 + RS_RS10500 0.38 -1.5
2,265,793 + RS_RS10500 0.56 +0.1
2,265,793 + RS_RS10500 0.56 -0.7
2,265,794 - RS_RS10500 0.56 +1.1
2,265,835 + RS_RS10500 0.61 -0.5
2,265,836 - RS_RS10500 0.61 -0.9
2,265,897 + RS_RS10500 0.68 -1.9
2,265,897 + RS_RS10500 0.68 +1.4
2,265,897 + RS_RS10500 0.68 -1.1
2,265,897 + RS_RS10500 0.68 -0.4
2,265,898 - RS_RS10500 0.68 +0.2
2,265,898 - RS_RS10500 0.68 -0.6
2,265,898 - RS_RS10500 0.68 -0.5
2,265,919 + RS_RS10500 0.71 +0.3
2,265,920 - RS_RS10500 0.71 +0.1
2,266,033 + RS_RS10500 0.84 +0.6
2,266,033 + RS_RS10500 0.84 +0.4
2,266,034 - RS_RS10500 0.84 +0.4
2,266,034 - RS_RS10500 0.84 -0.3
2,266,034 - RS_RS10500 0.84 -0.6
2,266,136 - +0.3
2,266,136 - -0.0
2,266,136 - -0.4
2,266,162 + -0.6
2,266,163 - -2.6

Or see this region's nucleotide sequence