Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS02195

Experiment: water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS02190 and RS_RS02195 are separated by 683 nucleotidesRS_RS02195 and RS_RS02200 are separated by 133 nucleotidesRS_RS02200 and RS_RS02205 are separated by 21 nucleotides RS_RS02190: RS_RS02190 - AMP-binding protein, at 468,951 to 470,666 _RS02190 RS_RS02195: RS_RS02195 - hypothetical protein, at 471,350 to 472,630 _RS02195 RS_RS02200: RS_RS02200 - hypothetical protein, at 472,764 to 473,192 _RS02200 RS_RS02205: RS_RS02205 - peptidase C39, at 473,214 to 473,918 _RS02205 Position (kb) 471 472 473Strain fitness (log2 ratio) -1 0 1 2at 470.442 kb on + strand, within RS_RS02190at 470.538 kb on + strandat 470.538 kb on + strandat 470.539 kb on - strandat 470.948 kb on + strandat 470.948 kb on + strandat 470.948 kb on + strandat 470.948 kb on + strandat 470.979 kb on + strandat 470.979 kb on + strandat 470.979 kb on + strandat 471.105 kb on + strandat 471.150 kb on + strandat 471.150 kb on + strandat 471.150 kb on + strandat 471.151 kb on - strandat 471.151 kb on - strandat 471.151 kb on - strandat 471.151 kb on - strandat 471.641 kb on - strand, within RS_RS02195at 471.797 kb on + strand, within RS_RS02195at 471.803 kb on + strand, within RS_RS02195at 472.628 kb on + strandat 472.998 kb on + strand, within RS_RS02200at 473.437 kb on - strand, within RS_RS02205at 473.484 kb on + strand, within RS_RS02205

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Per-strain Table

Position Strand Gene LocusTag Fraction water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
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470,442 + RS_RS02190 0.87 +0.0
470,538 + -0.8
470,538 + +0.1
470,539 - +0.3
470,948 + +2.6
470,948 + -0.0
470,948 + +0.3
470,948 + +2.0
470,979 + +0.2
470,979 + +0.8
470,979 + +0.6
471,105 + +0.5
471,150 + +0.9
471,150 + +1.0
471,150 + +0.8
471,151 - -0.5
471,151 - +0.6
471,151 - -0.1
471,151 - +0.1
471,641 - RS_RS02195 0.23 +1.4
471,797 + RS_RS02195 0.35 +0.6
471,803 + RS_RS02195 0.35 +1.3
472,628 + +0.0
472,998 + RS_RS02200 0.55 -0.8
473,437 - RS_RS02205 0.32 -0.7
473,484 + RS_RS02205 0.38 -0.2

Or see this region's nucleotide sequence