Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS20890

Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS20885 and RALBFv3_RS20890 are separated by 49 nucleotidesRALBFv3_RS20890 and RALBFv3_RS20895 are separated by 59 nucleotides RALBFv3_RS20885: RALBFv3_RS20885 - MFS transporter, at 1,391,129 to 1,392,589 _RS20885 RALBFv3_RS20890: RALBFv3_RS20890 - oxidoreductase, at 1,392,639 to 1,393,445 _RS20890 RALBFv3_RS20895: RALBFv3_RS20895 - TolC family protein, at 1,393,505 to 1,394,965 _RS20895 Position (kb) 1392 1393 1394Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1391.658 kb on + strand, within RALBFv3_RS20885at 1391.658 kb on + strand, within RALBFv3_RS20885at 1391.659 kb on - strand, within RALBFv3_RS20885at 1391.724 kb on + strand, within RALBFv3_RS20885at 1391.837 kb on + strand, within RALBFv3_RS20885at 1391.837 kb on + strand, within RALBFv3_RS20885at 1391.837 kb on + strand, within RALBFv3_RS20885at 1391.837 kb on + strand, within RALBFv3_RS20885at 1391.838 kb on - strand, within RALBFv3_RS20885at 1391.838 kb on - strand, within RALBFv3_RS20885at 1392.021 kb on + strand, within RALBFv3_RS20885at 1392.021 kb on + strand, within RALBFv3_RS20885at 1392.022 kb on - strand, within RALBFv3_RS20885at 1392.022 kb on - strand, within RALBFv3_RS20885at 1392.111 kb on - strand, within RALBFv3_RS20885at 1392.111 kb on - strand, within RALBFv3_RS20885at 1392.363 kb on + strand, within RALBFv3_RS20885at 1392.363 kb on + strand, within RALBFv3_RS20885at 1392.364 kb on - strand, within RALBFv3_RS20885at 1392.364 kb on - strand, within RALBFv3_RS20885at 1392.624 kb on + strandat 1392.819 kb on - strand, within RALBFv3_RS20890at 1392.819 kb on - strand, within RALBFv3_RS20890at 1392.859 kb on + strand, within RALBFv3_RS20890at 1393.013 kb on - strand, within RALBFv3_RS20890at 1393.013 kb on - strand, within RALBFv3_RS20890at 1393.024 kb on + strand, within RALBFv3_RS20890at 1393.024 kb on + strand, within RALBFv3_RS20890at 1393.024 kb on + strand, within RALBFv3_RS20890at 1393.024 kb on + strand, within RALBFv3_RS20890at 1393.024 kb on + strand, within RALBFv3_RS20890at 1393.024 kb on + strand, within RALBFv3_RS20890at 1393.024 kb on + strand, within RALBFv3_RS20890at 1393.024 kb on + strand, within RALBFv3_RS20890at 1393.024 kb on + strand, within RALBFv3_RS20890at 1393.024 kb on + strand, within RALBFv3_RS20890at 1393.025 kb on - strand, within RALBFv3_RS20890at 1393.025 kb on - strand, within RALBFv3_RS20890at 1393.025 kb on - strand, within RALBFv3_RS20890at 1393.025 kb on - strand, within RALBFv3_RS20890at 1393.025 kb on - strand, within RALBFv3_RS20890at 1393.026 kb on - strand, within RALBFv3_RS20890at 1393.026 kb on - strand, within RALBFv3_RS20890at 1393.257 kb on - strand, within RALBFv3_RS20890at 1393.353 kb on + strand, within RALBFv3_RS20890at 1393.418 kb on + strandat 1393.461 kb on + strandat 1393.461 kb on + strandat 1393.461 kb on + strandat 1393.461 kb on + strandat 1393.461 kb on + strandat 1393.506 kb on + strandat 1393.506 kb on + strandat 1393.506 kb on + strandat 1393.506 kb on + strandat 1393.506 kb on + strandat 1393.507 kb on - strandat 1393.507 kb on - strandat 1394.007 kb on + strand, within RALBFv3_RS20895at 1394.007 kb on + strand, within RALBFv3_RS20895at 1394.008 kb on - strand, within RALBFv3_RS20895at 1394.030 kb on - strand, within RALBFv3_RS20895at 1394.186 kb on + strand, within RALBFv3_RS20895at 1394.186 kb on + strand, within RALBFv3_RS20895at 1394.186 kb on + strand, within RALBFv3_RS20895at 1394.186 kb on + strand, within RALBFv3_RS20895at 1394.187 kb on - strand, within RALBFv3_RS20895at 1394.187 kb on - strand, within RALBFv3_RS20895at 1394.313 kb on + strand, within RALBFv3_RS20895at 1394.313 kb on + strand, within RALBFv3_RS20895at 1394.314 kb on - strand, within RALBFv3_RS20895at 1394.314 kb on - strand, within RALBFv3_RS20895at 1394.314 kb on - strand, within RALBFv3_RS20895at 1394.314 kb on - strand, within RALBFv3_RS20895at 1394.354 kb on + strand, within RALBFv3_RS20895at 1394.355 kb on - strand, within RALBFv3_RS20895at 1394.355 kb on - strand, within RALBFv3_RS20895at 1394.355 kb on - strand, within RALBFv3_RS20895at 1394.406 kb on + strand, within RALBFv3_RS20895at 1394.406 kb on + strand, within RALBFv3_RS20895at 1394.406 kb on + strand, within RALBFv3_RS20895at 1394.406 kb on + strand, within RALBFv3_RS20895at 1394.407 kb on - strand, within RALBFv3_RS20895at 1394.407 kb on - strand, within RALBFv3_RS20895at 1394.407 kb on - strand, within RALBFv3_RS20895at 1394.407 kb on - strand, within RALBFv3_RS20895at 1394.407 kb on - strand, within RALBFv3_RS20895at 1394.407 kb on - strand, within RALBFv3_RS20895at 1394.407 kb on - strand, within RALBFv3_RS20895at 1394.407 kb on - strand, within RALBFv3_RS20895at 1394.411 kb on - strand, within RALBFv3_RS20895

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,391,658 + RALBFv3_RS20885 0.36 +0.8
1,391,658 + RALBFv3_RS20885 0.36 +0.1
1,391,659 - RALBFv3_RS20885 0.36 +1.3
1,391,724 + RALBFv3_RS20885 0.41 -0.3
1,391,837 + RALBFv3_RS20885 0.48 -0.7
1,391,837 + RALBFv3_RS20885 0.48 +0.6
1,391,837 + RALBFv3_RS20885 0.48 -1.2
1,391,837 + RALBFv3_RS20885 0.48 -3.7
1,391,838 - RALBFv3_RS20885 0.49 -0.7
1,391,838 - RALBFv3_RS20885 0.49 +1.3
1,392,021 + RALBFv3_RS20885 0.61 -0.7
1,392,021 + RALBFv3_RS20885 0.61 -1.7
1,392,022 - RALBFv3_RS20885 0.61 +0.3
1,392,022 - RALBFv3_RS20885 0.61 +1.3
1,392,111 - RALBFv3_RS20885 0.67 +0.4
1,392,111 - RALBFv3_RS20885 0.67 -1.2
1,392,363 + RALBFv3_RS20885 0.84 -0.8
1,392,363 + RALBFv3_RS20885 0.84 +0.3
1,392,364 - RALBFv3_RS20885 0.85 +1.3
1,392,364 - RALBFv3_RS20885 0.85 -1.5
1,392,624 + +0.9
1,392,819 - RALBFv3_RS20890 0.22 +0.3
1,392,819 - RALBFv3_RS20890 0.22 +1.3
1,392,859 + RALBFv3_RS20890 0.27 -0.5
1,393,013 - RALBFv3_RS20890 0.46 -1.3
1,393,013 - RALBFv3_RS20890 0.46 +0.3
1,393,024 + RALBFv3_RS20890 0.48 -0.9
1,393,024 + RALBFv3_RS20890 0.48 -1.0
1,393,024 + RALBFv3_RS20890 0.48 +1.3
1,393,024 + RALBFv3_RS20890 0.48 +0.3
1,393,024 + RALBFv3_RS20890 0.48 +0.4
1,393,024 + RALBFv3_RS20890 0.48 -1.6
1,393,024 + RALBFv3_RS20890 0.48 +2.6
1,393,024 + RALBFv3_RS20890 0.48 +1.3
1,393,024 + RALBFv3_RS20890 0.48 +0.0
1,393,024 + RALBFv3_RS20890 0.48 +1.3
1,393,025 - RALBFv3_RS20890 0.48 -1.7
1,393,025 - RALBFv3_RS20890 0.48 -1.5
1,393,025 - RALBFv3_RS20890 0.48 +1.3
1,393,025 - RALBFv3_RS20890 0.48 -0.1
1,393,025 - RALBFv3_RS20890 0.48 -1.0
1,393,026 - RALBFv3_RS20890 0.48 -0.1
1,393,026 - RALBFv3_RS20890 0.48 -0.7
1,393,257 - RALBFv3_RS20890 0.77 +0.1
1,393,353 + RALBFv3_RS20890 0.88 +0.3
1,393,418 + -1.0
1,393,461 + -0.8
1,393,461 + -0.4
1,393,461 + -1.2
1,393,461 + -0.2
1,393,461 + +1.5
1,393,506 + -0.2
1,393,506 + -0.5
1,393,506 + +0.4
1,393,506 + -0.4
1,393,506 + -0.5
1,393,507 - +0.6
1,393,507 - -1.7
1,394,007 + RALBFv3_RS20895 0.34 -0.0
1,394,007 + RALBFv3_RS20895 0.34 -0.2
1,394,008 - RALBFv3_RS20895 0.34 -1.7
1,394,030 - RALBFv3_RS20895 0.36 +2.1
1,394,186 + RALBFv3_RS20895 0.47 -0.7
1,394,186 + RALBFv3_RS20895 0.47 +3.2
1,394,186 + RALBFv3_RS20895 0.47 -0.8
1,394,186 + RALBFv3_RS20895 0.47 -0.0
1,394,187 - RALBFv3_RS20895 0.47 +1.3
1,394,187 - RALBFv3_RS20895 0.47 +0.3
1,394,313 + RALBFv3_RS20895 0.55 +0.2
1,394,313 + RALBFv3_RS20895 0.55 -0.7
1,394,314 - RALBFv3_RS20895 0.55 +0.7
1,394,314 - RALBFv3_RS20895 0.55 +2.3
1,394,314 - RALBFv3_RS20895 0.55 +0.8
1,394,314 - RALBFv3_RS20895 0.55 -2.5
1,394,354 + RALBFv3_RS20895 0.58 -0.2
1,394,355 - RALBFv3_RS20895 0.58 -0.0
1,394,355 - RALBFv3_RS20895 0.58 -1.8
1,394,355 - RALBFv3_RS20895 0.58 -0.6
1,394,406 + RALBFv3_RS20895 0.62 +1.0
1,394,406 + RALBFv3_RS20895 0.62 -0.7
1,394,406 + RALBFv3_RS20895 0.62 +0.3
1,394,406 + RALBFv3_RS20895 0.62 -0.1
1,394,407 - RALBFv3_RS20895 0.62 +0.5
1,394,407 - RALBFv3_RS20895 0.62 -0.2
1,394,407 - RALBFv3_RS20895 0.62 -0.2
1,394,407 - RALBFv3_RS20895 0.62 +0.8
1,394,407 - RALBFv3_RS20895 0.62 -1.2
1,394,407 - RALBFv3_RS20895 0.62 -0.8
1,394,407 - RALBFv3_RS20895 0.62 +0.3
1,394,407 - RALBFv3_RS20895 0.62 -0.8
1,394,411 - RALBFv3_RS20895 0.62 +1.3

Or see this region's nucleotide sequence