Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS20060

Experiment: Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS20050 and RALBFv3_RS20055 overlap by 8 nucleotidesRALBFv3_RS20055 and RALBFv3_RS20060 are separated by 36 nucleotidesRALBFv3_RS20060 and RALBFv3_RS20065 are separated by 272 nucleotides RALBFv3_RS20050: RALBFv3_RS20050 - type VI secretion system contractile sheath large subunit, at 1,191,781 to 1,193,271 _RS20050 RALBFv3_RS20055: RALBFv3_RS20055 - type VI secretion system contractile sheath small subunit, at 1,193,264 to 1,193,776 _RS20055 RALBFv3_RS20060: RALBFv3_RS20060 - hypothetical protein, at 1,193,813 to 1,194,460 _RS20060 RALBFv3_RS20065: RALBFv3_RS20065 - type VI secretion system lipoprotein TssJ, at 1,194,733 to 1,195,413 _RS20065 Position (kb) 1193 1194 1195Strain fitness (log2 ratio) -2 -1 0 1 2at 1192.836 kb on - strand, within RALBFv3_RS20050at 1192.965 kb on - strand, within RALBFv3_RS20050at 1193.709 kb on + strand, within RALBFv3_RS20055at 1193.709 kb on + strand, within RALBFv3_RS20055at 1193.893 kb on + strand, within RALBFv3_RS20060at 1193.894 kb on - strand, within RALBFv3_RS20060at 1194.276 kb on + strand, within RALBFv3_RS20060at 1194.443 kb on - strandat 1194.443 kb on - strandat 1194.531 kb on - strandat 1195.037 kb on + strand, within RALBFv3_RS20065at 1195.038 kb on - strand, within RALBFv3_RS20065at 1195.038 kb on - strand, within RALBFv3_RS20065at 1195.038 kb on - strand, within RALBFv3_RS20065at 1195.039 kb on + strand, within RALBFv3_RS20065at 1195.040 kb on - strand, within RALBFv3_RS20065at 1195.078 kb on + strand, within RALBFv3_RS20065

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,192,836 - RALBFv3_RS20050 0.71 +1.0
1,192,965 - RALBFv3_RS20050 0.79 +1.5
1,193,709 + RALBFv3_RS20055 0.87 -0.6
1,193,709 + RALBFv3_RS20055 0.87 -1.6
1,193,893 + RALBFv3_RS20060 0.12 -0.4
1,193,894 - RALBFv3_RS20060 0.12 +0.1
1,194,276 + RALBFv3_RS20060 0.71 -0.4
1,194,443 - +0.2
1,194,443 - +1.9
1,194,531 - +0.8
1,195,037 + RALBFv3_RS20065 0.45 +0.9
1,195,038 - RALBFv3_RS20065 0.45 +0.1
1,195,038 - RALBFv3_RS20065 0.45 -1.9
1,195,038 - RALBFv3_RS20065 0.45 -0.1
1,195,039 + RALBFv3_RS20065 0.45 -0.1
1,195,040 - RALBFv3_RS20065 0.45 +0.2
1,195,078 + RALBFv3_RS20065 0.51 +1.2

Or see this region's nucleotide sequence